Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0341 ATGGCTGGACCTAGGATTGCTCATGCTACCTTGAAAGGGCCAAGTGTTGTGAAGGAGATATGCATTGGTTTTGTACTTGCTCTTGCCGCTGGTAGTGTGTGGAAGATGCATCACTGGAATGAACAGAGGAAAGTCAGAACCTTTTATGATTTACTAGAGAAAGGTGAGATTAGTGTTATTGCAGAGGAAGAGGCATCAGACTCGTCGCAAAAGTCACACACCGTCAAGTTTCCCCTGCTACCCATCCAAAGGTTTCCTGCCAAGTTTGGTTCGGGTCGAATTCTTACTTCTGTTCGACCCGTGCGTACTGCTCCAGATAGAATATCCGACAAGGTTGAAGAGAGCATAAAGAGCGCGGAGGATGCATGCTCGGGTGACCCAGCCGGCAGTGAATGTGCGGCGGCATGGGACGAGGTGGAGGAGCTGAGCGCGGCGGCCAGCCATGCGAGGGACAGGAAGAAAGAATCCGACCCGCTCGATAACTATTGCAAGGACAACCCGGAGACCGATGAGTGCCGCACTTACGATAATTGA 534 0.5131 MAGPRIAHATLKGPSVVKEICIGFVLALAAGSVWKMHHWNEQRKVRTFYDLLEKGEISVIAEEEASDSSQKSHTVKFPLLPIQRFPAKFGSGRILTSVRPVRTAPDRISDKVEESIKSAEDACSGDPAGSECAAAWDEVEELSAAASHARDRKKESDPLDNYCKDNPETDECRTYDN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0341 177 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 59 177 IPR039314 -
Lele05g0341 177 SMART CP12_2 108 177 IPR003823 -
Lele05g0341 177 Pfam CP12 domain 108 176 - -
Lele05g0341 177 MobiDBLite consensus disorder prediction 146 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0341 Lele-ChrLele05 1939560 1941812 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0341 05 1939560 1941812 Lele05g0341 05 1939560 1941812 ECH
Lele05g0341 05 1939560 1941812 Lele07g0359 07 1998323 1998715 hybridization
Lele05g0341 05 1939560 1941812 Lele08g0163 08 1004157 1004549 hybridization