Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1409 ATGGGGCAGGGAAGGAGAAGATGCCCCCAGCCTCACTCTTGTTCATGTCGCGGTGCTTTCACAGCAAAATCATTTCGTGCCTCACCTACTCTCTTCTCAGCTAGGGGTCGGAATCATAAGTTTACTCTCGGTGTTGCGAGAACAATTAGAGGCTGTTGTGGTTTCGAGGGAGACTTGGACTCCGATGGTGAGCAAGAGCCGGTCTTTGCTAAGAGGACGAATTACGCCGGCGTGCGGTTAGAAGCGGCTGTCGTTGCCGGTTCAGGAAAGCTCAGGTTCGATTCTTGGATCTCTTCCCGCATTAGCGGCATAAGTAGGGCTCGTGTGCAGTCTAGCATTAGAGCGGGGCTTGTTCATGTCAACGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAAGGATGGGGATAAGATCCATTGCACGATTTCAGAGTTACAACAGTTGAGAGCTGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATGTGCTAGTAATTAATAAACCTGCGCACTTGGTTGTGCATCCAGCTCCTGGAAATACATCCGGTACGCTTGTCAATGGAATTCTTCACCATTGCAACCTTCCAAATGCTGAAATTTCAAACAAGGAAGCTCTTTCCGAGACTGAAGATTCTTTTGATGATTTTGATAGCTACTCTATTCATCCAAGTACCAGTGAAGGTTTACAATCACATTCCAGCATGTGTGGAGCATCAGTCCGCCCAGGGATCGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTGGCGAAGGATGAACATTCCCATATCCATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTCAGTCTCACTGTTGGGGTTCCCTCTCCAACTGCTGGACGTGTTGAGGTTCCAGTTGGTCGTGACCCTAATAACCGGATTCGAATGACTGCTGTAGCTGGATCAGTTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGTGGAATTAGTTTAGCTCAGCCTATTAGCACTTTCCTTGACACAATGGCTTTAGGATGTTCTATTTTTGGGAATTCCGTGTCTTTTGGTTACTTGTATTGTATCTGGTACAAAGTAACTGAGATACTTGCTAAGGGTGCTTGTGCATTGCTTGAATGGAAGTTAGAAACCGGGCGTACTCACCAGATACGTGCACACGCTAAGTATCTAGGAGTTCCTCTACTGGGTGATGAGGTGTACGGAGCGACGAGGAGCATGGTCTTATCACTACTTCAGCCCAGAACACCAACGAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTTGGGTGA 1356 0.4668 MGQGRRRCPQPHSCSCRGAFTAKSFRASPTLFSARGRNHKFTLGVARTIRGCCGFEGDLDSDGEQEPVFAKRTNYAGVRLEAAVVAGSGKLRFDSWISSRISGISRARVQSSIRAGLVHVNGRVVDKVSFNVKDGDKIHCTISELQQLRAEPEHMELDIVYEDEHVLVINKPAHLVVHPAPGNTSGTLVNGILHHCNLPNAEISNKEALSETEDSFDDFDSYSIHPSTSEGLQSHSSMCGASVRPGIVHRLDKGTSGLLVVAKDEHSHIHLSEQFKLRTIKRVYVSLTVGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSVNSRKARYAASSGISLAQPISTFLDTMALGCSIFGNSVSFGYLYCIWYKVTEILAKGACALLEWKLETGRTHQIRAHAKYLGVPLLGDEVYGATRSMVLSLLQPRTPTSLRGKIVQMVSRLDRPCLHALTLG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1409 451 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 96 449 - -
Lele04g1409 451 SUPERFAMILY Pseudouridine synthase 151 450 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele04g1409 451 ProSitePatterns Rlu family of pseudouridine synthase signature. 248 262 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele04g1409 451 Gene3D Pseudouridine synthase 148 451 - -
Lele04g1409 451 SMART s4_6 91 149 IPR002942 GO:0003723
Lele04g1409 451 Gene3D - 76 147 IPR036986 GO:0003723
Lele04g1409 451 Pfam S4 domain 92 138 IPR002942 GO:0003723
Lele04g1409 451 CDD S4 92 170 - -
Lele04g1409 451 CDD PseudoU_synth_RluA_like 166 451 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele04g1409 451 SUPERFAMILY Alpha-L RNA-binding motif 90 178 - -
Lele04g1409 451 FunFam RNA pseudouridine synthase 2 chloroplastic 78 146 - -
Lele04g1409 451 Pfam RNA pseudouridylate synthase 165 397 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele04g1409 451 ProSiteProfiles S4 RNA-binding domain profile. 91 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1409 Lele-ChrLele04 19438540 19441300 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1409 04 19438540 19441300 Lele04g1409 04 19438540 19441300 ECH
Lele01g1161 01 6896254 6902875 Lele04g1409 04 19438540 19441300 hybridization
Lele02g1428 02 18576107 18585021 Lele04g1409 04 19438540 19441300 hybridization