Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1428 ATGTGTCTCCTCAATCCGTGGACCCCAGTCCCCCCGAGATCAGCCAAGGGACTGGACTTTTACGGCACTATCCTTAAAGAAAAATCACACTTAGATTGCGAGAACGAACAAGATGAAATGACGTGGAAAGAATATGGTTCTGGGCAAAACACATCAGTTTCGCTTCTGATGTTGCTTTCTTGTTCCCGTATAGCTGAGGGACTCCAGCCTCGTACAGAGCCACACAGAGAAATTAAAAGAAAGTGGGAGAGAAAGATAGAGAGGGAGCAAGGGGCGAGAGAGAGAGAGAGAGAGATGGGGACAGAGACGACGACGAAGCATGGACCTGGAGCTCTGTTGAGCAGTGGACACTTGGGAAACTTGTCAAGCTCGAGATTTTCGTCTCTTCTTGCCTCCGAAGATCGTGATTTTCTGCTCTCTCCCACTGGGTCTCAGGTGAAAGTTTGTGATATTGAAGGTAAAGTGGTGGGTCTTTTGTTTGGTGCTAACTGTACTTTTGTTCGTCGTTTTGATCCCACGGAGGATGGGGCAGGGAAGGAGAAGATGCTCCAGCTTCACTCTTGTTCATGTCGCGGTGCTTTCACAGCAAAATCATTTCGTGCCTCACCTCTCTTCCCAGCTAGGGGTCGGAATCATAAGTTTACTCTCGGTGTTGCGAGAACAATTAGAGGCTGTTGTGGTTTCGAGGGAGACTTGGACTTCGATGGTGAGCAAGAGCCGGTCTTTGCTAAGAGGATGAATTACGCCAGCGTGCGGTTGGAAGGGGCTGTCGATACCGGTTCAGGAAAGCTCAGGCTCGATTCTTGGATCTCTTCCCGCATTAGCGGCATAAGTAGGGCTCGTGTGCAGGCTAGCATTAGAGCGGGGCTTGTTCATGTCAACGGCCTTGTTGTTGATAAGGCTTCTTTCAATGTCAAGGATGGGGATAAGATCAATTGCACGATTTCAGAGTTACAACAGTTGAGAGCTGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATGTGCTAGTAATTAATAAACCTGCGCACTTGGTTGTGCATCCAGGTTCTGGAAATACATCCGGTACTCTTGTCAATGGAATTCTTCACCATTGCAACCTTCCAAATGCTGAAATTTCAAACAAGGAAGCTCTTCCCGAGACTGAAGATTCTTTTGATGATTTTGATAGCTACTTTATTCAAAGTATCATTGAAGGGTTACAATCACATTCCAGCATGTGTGGAGCATCAGTCCGGCCAGGGATCGTGCATAGGCTGGACAAAGTCACTAGTGGGTTGCTTGTTGTGGCGAAGGATGAACATTCCCATATCCATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTGAGTCTCACTGTTGGGGTTCCCTCTCCAACTGCTGGACGTGTTGAGGTTCCAGTTGGTCGTGATCCTAATAACCGGATTCGAATGGCTGCTGTAGCTGGATCAGTTAATTATAGAAATGCCCGTTATGCTGCTAGTAGGTACAAAGTAACTGAGATACTTGCTAAGGGTGCTTGTGCATTGGTTGAATGGAAGTTAGAAACCGGGCGTACTCACCAGATACGTGCACACGCTAAGTATCTAGGAGTTCCTCTACTGGGTGATGAGGTCTACGGAGGGACGAGGAGCATGGTCTTATCACTACTTGGTCCCAGAACACCAACGAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTAGGCATAGGCCTTGCCTTCATGCTTTGACTCTTGGGTTTCAGCATCCGCATACCGGAGAGCAGTTGCATTTTTCATGTCAAACCCCTGCAGATTTTGAGGAGATTTTGAGCCAGCTTCGGACAGTTGGCTGA 1857 0.4728 MCLLNPWTPVPPRSAKGLDFYGTILKEKSHLDCENEQDEMTWKEYGSGQNTSVSLLMLLSCSRIAEGLQPRTEPHREIKRKWERKIEREQGAREREREMGTETTTKHGPGALLSSGHLGNLSSSRFSSLLASEDRDFLLSPTGSQVKVCDIEGKVVGLLFGANCTFVRRFDPTEDGAGKEKMLQLHSCSCRGAFTAKSFRASPLFPARGRNHKFTLGVARTIRGCCGFEGDLDFDGEQEPVFAKRMNYASVRLEGAVDTGSGKLRLDSWISSRISGISRARVQASIRAGLVHVNGLVVDKASFNVKDGDKINCTISELQQLRAEPEHMELDIVYEDEHVLVINKPAHLVVHPGSGNTSGTLVNGILHHCNLPNAEISNKEALPETEDSFDDFDSYFIQSIIEGLQSHSSMCGASVRPGIVHRLDKVTSGLLVVAKDEHSHIHLSEQFKLRTIKRVYVSLTVGVPSPTAGRVEVPVGRDPNNRIRMAAVAGSVNYRNARYAASRYKVTEILAKGACALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTRSMVLSLLGPRTPTSLRGKIVQMVSRHRPCLHALTLGFQHPHTGEQLHFSCQTPADFEEILSQLRTVG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1428 618 Gene3D - 249 320 IPR036986 GO:0003723
Lele02g1428 618 Pfam S4 domain 265 311 IPR002942 GO:0003723
Lele02g1428 618 SUPERFAMILY Alpha-L RNA-binding motif 263 350 - -
Lele02g1428 618 MobiDBLite consensus disorder prediction 87 103 - -
Lele02g1428 618 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 268 612 - -
Lele02g1428 618 Coils Coil 79 99 - -
Lele02g1428 618 SMART s4_6 264 322 IPR002942 GO:0003723
Lele02g1428 618 SUPERFAMILY Pseudouridine synthase 324 615 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele02g1428 618 CDD S4 265 343 - -
Lele02g1428 618 ProSiteProfiles S4 RNA-binding domain profile. 264 337 - -
Lele02g1428 618 MobiDBLite consensus disorder prediction 87 114 - -
Lele02g1428 618 Pfam RNA pseudouridylate synthase 338 534 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele02g1428 618 ProSitePatterns Rlu family of pseudouridine synthase signature. 420 434 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele02g1428 618 Gene3D Pseudouridine synthase 321 604 - -
Lele02g1428 618 CDD PseudoU_synth_RluA_like 339 588 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1428 Lele-ChrLele02 18576107 18585021 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1428 02 18576107 18585021 Lele02g1428 02 18576107 18585021 ECH
Lele02g1428 02 18576107 18585021 Lele03g1175 03 6869106 6876042 hybridization
Lele02g1428 02 18576107 18585021 Lele04g1409 04 19438540 19441300 hybridization