Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1161 ATGAAGACAGAGACGACGGCGAAGCATGGACCTGGAGCTCTTTTGAGCAATGGACACCCTGGAAACTTTTCCAGCTCGAGATTTTCGTCTCTTCTTGCCTCCAAAGATCGTGATTTTCTGCTCTCTCCATCCGGGTCTCAGGTGAAAGTTTGTGATATTGAAGGTAAAGTGGTGGGACTTCTGTTCGGTGCTAACTGTGCGTGCGAGCTATTTCAGTTTGATCAGGGCTTAGCTTTGATCGCCATGGTGGCTTGGCGCCGTTCCGCTGTACTTATGGCGTCGTTTTTATCCCAACGGGCGGTGAAGGAGAAGATGCTCCAGCTTCCCTCTTGTACATGTCGCGGCGCTTTAACAGCAAAATCATTTCGTACCTCACCTACTCTCTTCTCCACTAGGGGTCGGACTCATAAGTTTCCTCTCGGTGTTGCGAGAACAATTAGAGGCCGTTGTGGTTTCGACGGAGACTTGGACTCCGATGGTGAGCAAGAGCCGGTCTTTGCTAAGAGGACGAATTACGCCGGCGTGCGGTTGGAGGAGACTGTTGATGCCGGTTTAGGAAGGCTCAGGCTCGATTCTTGGATTTCTTCCCGCATTAGCGGCATAAGTAGGGCTCGTGTGCAATCCAGTATTAGAGCGGGGTTTGTTCATGTCAACGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAAGGATGGGGATAAGATCAATTGCACGATTTCAGAGTTACAACAGTTGAGAGCGGAGCCAGAACATATGGAGTTGGATATCTTTTATGAAGATGAGCATGTGCTAGTAATCAATAAACCTGCGCACTTGGTTGTGCATCCAGCACCTGGAAATACATCTGGTACTCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGCTGAAATTTCAAACAAGGAAGCTCTTTCAGAGACTGAAGATTCTGATGATTATCTTGATAGCTACTCTATTCATCCAAGTACCAGTGAAGGTTTACGATCACATTCCAGCATGTGTGGAGCGTCAGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTGGCGAAGGATGAACATTCCCATATCCATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTCAGTCTCACTGTTGGGGTTCCCTCTCCAACTGTTGGGCGTGTTGAGGTTCCAGTTGGTCGTGACCCTAATAACCGGATTCGAATGACTGCTGTAGCTGGATCAGTTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAACTGAGATACTCGCTAAGGGTGCTTGTGCATTGGTTGAATGGAAGTTAGAAACCGGGCGTACTCATCAGATCCGTGCACACGCTAAGTATCTAGGAGTTCCTCTTCTGGGTGATGAGGTGTACGGTGGGACGAAGAGCATGGCCTTATCGCTACTTCAGCCCAGAACACCGACAACGCTGCGTGGCAAAATTGTACGAATGGTTTCAATGCTAGATAGGCCTTGCCTTCACGCTTTGACTCTTGGGTTTCGGCATCCCCATACAGGAGAACAGTTGCATTTTTCATGTCAACCCCCTCCAGACTTTGATGAGATTTTGAGCCAGCTTCGGACAATTGGCTGA 1635 0.4801 MKTETTAKHGPGALLSNGHPGNFSSSRFSSLLASKDRDFLLSPSGSQVKVCDIEGKVVGLLFGANCACELFQFDQGLALIAMVAWRRSAVLMASFLSQRAVKEKMLQLPSCTCRGALTAKSFRTSPTLFSTRGRTHKFPLGVARTIRGRCGFDGDLDSDGEQEPVFAKRTNYAGVRLEETVDAGLGRLRLDSWISSRISGISRARVQSSIRAGFVHVNGRVVDKVSFNVKDGDKINCTISELQQLRAEPEHMELDIFYEDEHVLVINKPAHLVVHPAPGNTSGTLVNGILHHCNLPNAEISNKEALSETEDSDDYLDSYSIHPSTSEGLRSHSSMCGASVRPGIVHRLDKGTSGLLVVAKDEHSHIHLSEQFKLRTIKRVYVSLTVGVPSPTVGRVEVPVGRDPNNRIRMTAVAGSVNSRKARYAASRYKVTEILAKGACALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLQPRTPTTLRGKIVRMVSMLDRPCLHALTLGFRHPHTGEQLHFSCQPPPDFDEILSQLRTIG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1161 544 Gene3D - 174 244 IPR036986 GO:0003723
Lele01g1161 544 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 192 537 - -
Lele01g1161 544 ProSiteProfiles S4 RNA-binding domain profile. 188 261 - -
Lele01g1161 544 SUPERFAMILY Pseudouridine synthase 248 541 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele01g1161 544 SMART s4_6 188 246 IPR002942 GO:0003723
Lele01g1161 544 ProSitePatterns Rlu family of pseudouridine synthase signature. 345 359 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele01g1161 544 Pfam S4 domain 189 235 IPR002942 GO:0003723
Lele01g1161 544 SUPERFAMILY Alpha-L RNA-binding motif 187 275 - -
Lele01g1161 544 Gene3D Pseudouridine synthase 245 529 - -
Lele01g1161 544 Pfam RNA pseudouridylate synthase 262 459 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele01g1161 544 FunFam RNA pseudouridine synthase 2 chloroplastic 175 243 - -
Lele01g1161 544 CDD S4 189 267 - -
Lele01g1161 544 MobiDBLite consensus disorder prediction 1 21 - -
Lele01g1161 544 CDD PseudoU_synth_RluA_like 263 514 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1161 Lele-ChrLele01 6896254 6902875 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1161 01 6896254 6902875 Lele01g1161 01 6896254 6902875 ECH
Lele01g1161 01 6896254 6902875 Lele03g1175 03 6869106 6876042 hybridization
Lele01g1161 01 6896254 6902875 Lele04g1409 04 19438540 19441300 hybridization