Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1406 ATGGCTTTCATCAATTCCAGATTACGCTTCTGCCACTCTCTCACTCGCACTTCCAAATTCTGTACTACTTCTTCTTCTTCAACTTTAGTTTCAGAGGCTACCCTTCAACAAGACGTGGATGAAACACCCCAAAGCACTTCCTTATCCCCTGAAGAAACCCTTTTAGCTGAGAAATTTCATGCTTTAATCAAAGACCATTACCGCAACAACCCTAACCCTAACCCTAACGGCCTTACGCCCACCCCTCATTTCACTATGCCCGATCTCTCTCTCGACTTTTCTCGAATCACCTCCCACCACCCTCTTTCCCCCTCCGTCGTCCGCCGCGTGCTTGAGAAATGCGGCGGTGTCCGCCACGGTATCCCTTTCCTCCAATCCCTGGCTTTCTTCAATTGGGCCACCACGTGCGAGGGCTTTCCCACCACGCCGGAGCCCTATATCGAGATGATTGACCTCGCCGGGAAGCTCAGGCACTTCGATTTAGCCTGGCATCTCATCGATTTGATGAAAGCCCGAGGTGTCCAAATAACCGTCGGGACATTCTCTTTCCTCGTCCGGCGATACGTGAGAGCAGGATTGGCTGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTATGGCTGCAAAGCTGACAATATTGCCTTTTCAATTGTCATTAGTATTCTGTGCAAGAAGAGAAGGGCTAGCGAAGCTCAGTCTTTTTTCGATAGCTTGAAGCACAAATTTGAGCCCGATGTCATAGTGTACACCAACCTGGTTCGTGGTTGGTGCAGAGCAGGTAATATTTCAGAGGCCGAGCGTGTGTTTGGGGAGATGAAGAATGCTGGAATCAAACCCAATGTTTATACTTACAGCATCGTGATTGATTCACTATGTCGTTGTGGACAAATCACTCGTGCGCATGATGTTTTCTCTGAGATGATAGATGTGGGTTGTGATCCAAATTCCATTACTTTCAACAATCTCATGCGTGTTCACGTCAAAGCTGGAAGGACTGAGAAGGTATTGCAAGTTTATAATCAGATGAAGAGACTTGGATGTGCTCCTGATACGATCACCTATAATTTCCTTATAGAGACACATTGTAAAGAAGATAATCTTGACGAAGCTACCAAGGTTCTCAATTCGATGGTCAAGAAAGGGTGTGCTCCTAATGCTTCTACTTTCAATCTTATTTTCAGATGCGTAGCTAAGTTACATGATATAAATGGTGCTCATCGGTTGTATGCTAAAATGAAGGAACTCAAGTGTGAGCCGAATACACTGACCTACAATATATTAATGGGCATGTTCTCTCATGCAAGATCTACTGATATGGTGCTCAAAATGAAGAAGGAAATGGATGAGAATGAAGTTGAGCCTAATGTGAATACTTACAGGTTGTTGATCTCAATGTACTGTGGAATGGGACACTGGAACAATGCGTACAAGTTGCTGAGAGAGATGGTTGAAGAGAAGTGCATAAAACCGAATCATGGGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGCTCCTTATAG 1590 0.4535 MAFINSRLRFCHSLTRTSKFCTTSSSSTLVSEATLQQDVDETPQSTSLSPEETLLAEKFHALIKDHYRNNPNPNPNGLTPTPHFTMPDLSLDFSRITSHHPLSPSVVRRVLEKCGGVRHGIPFLQSLAFFNWATTCEGFPTTPEPYIEMIDLAGKLRHFDLAWHLIDLMKARGVQITVGTFSFLVRRYVRAGLAAEAVHTFNRMEDYGCKADNIAFSIVISILCKKRRASEAQSFFDSLKHKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKNAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCAPDTITYNFLIETHCKEDNLDEATKVLNSMVKKGCAPNASTFNLIFRCVAKLHDINGAHRLYAKMKELKCEPNTLTYNILMGMFSHARSTDMVLKMKKEMDENEVEPNVNTYRLLISMYCGMGHWNNAYKLLREMVEEKCIKPNHGVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lele04g1406 529 Gene3D Tetratricopeptide repeat domain 337 446 IPR011990 GO:0005515
Lele04g1406 529 Pfam PPR repeat family 350 399 IPR002885 -
Lele04g1406 529 Pfam PPR repeat family 245 294 IPR002885 -
Lele04g1406 529 Pfam PPR repeat family 420 468 IPR002885 -
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Lele04g1406 529 SUPERFAMILY TPR-like 210 431 IPR011990 GO:0005515
Lele04g1406 529 Gene3D Tetratricopeptide repeat domain 236 336 IPR011990 GO:0005515
Lele04g1406 529 Gene3D Tetratricopeptide repeat domain 97 232 IPR011990 GO:0005515
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Lele04g1406 529 Pfam PPR repeat 318 348 IPR002885 -
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Lele04g1406 529 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 180 400 - -
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Lele04g1406 529 Gene3D Tetratricopeptide repeat domain 447 522 IPR011990 GO:0005515
Lele04g1406 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Lele04g1406 529 Pfam Pentatricopeptide repeat domain 165 223 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Lele04g1406 529 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1406 Lele-ChrLele04 19432948 19434537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1406 137 524 Glycosyltransferase AT1G05670 24.936 9.77e-45 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1406 04 19432948 19434537 Lele04g1406 04 19432948 19434537 ECH
Lele01g1159 01 6890326 6891463 Lele04g1406 04 19432948 19434537 hybridization
Lele02g1426 02 18570471 18572054 Lele04g1406 04 19432948 19434537 hybridization