Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1426 ATGGCTTTCATCAATTCCAGATTACGCTTCTGCCACTCTCTCAGTCGCACTTCCAAATTCTGTACTTCTTCTTCTTCTTCAGCTTTAGTTTCAGAAGCTACCCTTCAACAAGACGTGGATGAAACACCTCAAAGCACTTCCTTATCCCCTGAAGAAACCCTTTTAGCTGAGAAATTTCATGCTTTAATCAAAGACCATTACCGCAACAACCCTAACCCTAACGCCCTTACACCCACCCCTCATTTCACTATGCCCGATCTCTCACTCGACTTTTCTCGAATCACCTCACACCACCCTCTTTCCCCCTCCGTCGTCCGCCGCGTGCTTGAGAAATGCGGCGGTGTCCGCCACGGTATCCCTTTCCTTCAATCCCTGGCTTTCTTCAATTGGGCCACCACGTGCGAGGGCTTTCCCACCACGCCGGAGCCCTATATCGAGATGATTGACCTCGCCGGGAAGCTCAGGCACTTCGATTTAGCCTGGCATCTCATCGATTTGATGAAAGCCCGAGGTGTTCAAATAACCGTTGAGACATTCTCTTTCCTCGTCCGGCGATACGTGAGAGCAGGATTGGCTGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTATGGCTGCACGGCTGACAATATTGCCTTTTCAATTGTCATTAGTATTCTGTGCAAGAAGAGAAGGGCTAGCGAAGCTCAGTCTTTTTTCGATAGCTTGAAGCACAAATTTGAGCCCGATGTCATAGTGTACACCAACCTGGTTCGTGGTTGGTGCAGAGCAGGTAATATTTCAGAGGCCGAGCGTGTGTTTGGGGAGATGAAGAATGCTGGAATCAAACCCAATGTTTATACTTACAGCATCGTGATTGATTCACTATGTCGTTGTGGACAAATCACTCGTGCGCATGATGTTTTCTCTGAGATGATAGATGTGGGTTGTGATCCAAATTCCATTACTTTCAACAATCTAATGCGTGTTCACGTCAAAGCTGGAAGGACTGAGAAGGTATTGCAAGTTTATAATCAGATGAAGAGACTTGGATGTGCTCCTGATACGATCACCTATAATTTCCTTATAGAGACACATTGTAAAGAAGATAATCTTGACGAAGCTACCAAGGTTCTCAATTCGATGGTCAAGAAAGGGTGTGCTCCTAATGCTTCTACTTTCAATCTTATTTTCAGATGCGTAGCTAAGTTACATGATATAAATGGTGCTCATAGGTTGTATGCGAAAATGAAGGAACTCAAGTGTGAGCCTAATACACTGACCTACAATATATTAATGGGCATGTTCTCTCATGCAAGATCTACTGATATGGTGCTCAAAATGAAGAAGGAAATGGATGAGAATGAAGTTGAGCCTAATGTGAATACTTACAGGCTGTTGATCACAATGTACTGTGGAATGGGACACTGGAACAACGCGTACAAGTTACTGAGAGAGATGGTTGATGAGAAGTGCATAAAACCGAATCATGGGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGCTCCATATAG 1584 0.4495 MAFINSRLRFCHSLSRTSKFCTSSSSSALVSEATLQQDVDETPQSTSLSPEETLLAEKFHALIKDHYRNNPNPNALTPTPHFTMPDLSLDFSRITSHHPLSPSVVRRVLEKCGGVRHGIPFLQSLAFFNWATTCEGFPTTPEPYIEMIDLAGKLRHFDLAWHLIDLMKARGVQITVETFSFLVRRYVRAGLAAEAVHTFNRMEDYGCTADNIAFSIVISILCKKRRASEAQSFFDSLKHKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKNAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCAPDTITYNFLIETHCKEDNLDEATKVLNSMVKKGCAPNASTFNLIFRCVAKLHDINGAHRLYAKMKELKCEPNTLTYNILMGMFSHARSTDMVLKMKKEMDENEVEPNVNTYRLLITMYCGMGHWNNAYKLLREMVDEKCIKPNHGVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Lele02g1426 527 Pfam Pentatricopeptide repeat domain 163 221 IPR002885 -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Lele02g1426 527 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 152 398 - -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Lele02g1426 527 SUPERFAMILY TPR-like 209 425 IPR011990 GO:0005515
Lele02g1426 527 Pfam PPR repeat 316 346 IPR002885 -
Lele02g1426 527 Gene3D Tetratricopeptide repeat domain 400 526 IPR011990 GO:0005515
Lele02g1426 527 Gene3D Tetratricopeptide repeat domain 95 230 IPR011990 GO:0005515
Lele02g1426 527 Gene3D Tetratricopeptide repeat domain 310 399 IPR011990 GO:0005515
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Lele02g1426 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Lele02g1426 527 Pfam PPR repeat family 243 292 IPR002885 -
Lele02g1426 527 Pfam PPR repeat family 419 466 IPR002885 -
Lele02g1426 527 Pfam PPR repeat family 348 397 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 351 385 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 457 490 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Lele02g1426 527 TIGRFAM PPR: pentatricopeptide repeat domain 178 210 IPR002885 -
Lele02g1426 527 Gene3D Tetratricopeptide repeat domain 236 309 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1426 Lele-ChrLele02 18570471 18572054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1426 125 527 Glycosyltransferase AT1G05670 24.413 3.25e-30 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1426 02 18570471 18572054 Lele02g1426 02 18570471 18572054 ECH
Lele02g1426 02 18570471 18572054 Lele03g1172 03 6862881 6864026 hybridization
Lele02g1426 02 18570471 18572054 Lele04g1406 04 19432948 19434537 hybridization