Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1159 ATGATTGACCTCGCTGGGAAGCTCAAGCACTTCGATTTAGCTTGGCATCTCATCGATTTGATGAAAGCCCGAGGTGTTCAAATAACCGTTGAGACATTCTCTTTCCTCGTCCGGCGATACGTGAGAGTAGGATTGGCCGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTATGGCTGCACTCCTGACAAGATTGCTTTCTCAATTGTCATTAGTATTTTGTGCAAGAAGAGAAGAGCAAGCGAAGCTCAGTCTTTTTTCGATTGCTCGAAGCACAAATTTGAGCCCGATGCATATGACACATGCAAAGATGCTAATCTTGATGAAGCTACCAAGGTTCTCAATTCAATGGTCAAGAAAGGGTGTGCTCCTAATGCTTCTACTTTCAACCTTATATTCAGATGCGTAGCTAAGTTACATGATATAAACGAAGTGCATAAAACCGAATCAAGGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAATTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGCTCCATATAG 564 0.4379 MIDLAGKLKHFDLAWHLIDLMKARGVQITVETFSFLVRRYVRVGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRRASEAQSFFDCSKHKFEPDAYDTCKDANLDEATKVLNSMVKKGCAPNASTFNLIFRCVAKLHDINEVHKTESRVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1159 187 TIGRFAM PPR: pentatricopeptide repeat domain 103 127 IPR002885 -
Lele01g1159 187 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Lele01g1159 187 TIGRFAM PPR: pentatricopeptide repeat domain 32 64 IPR002885 -
Lele01g1159 187 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 1 182 - -
Lele01g1159 187 Gene3D Tetratricopeptide repeat domain 1 103 IPR011990 GO:0005515
Lele01g1159 187 Gene3D Tetratricopeptide repeat domain 104 186 IPR011990 GO:0005515
Lele01g1159 187 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Lele01g1159 187 Pfam Pentatricopeptide repeat domain 17 75 IPR002885 -
Lele01g1159 187 Pfam PPR repeat family 103 139 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1159 Lele-ChrLele01 6890326 6891463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1159 21 181 Miscellaneous Gene Families AT4G11690 25.000 1.26e-12 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1159 01 6890326 6891463 Lele01g1159 01 6890326 6891463 ECH
Lele01g1159 01 6890326 6891463 Lele03g1172 03 6862881 6864026 hybridization
Lele01g1159 01 6890326 6891463 Lele04g1406 04 19432948 19434537 hybridization