Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0951 ATGAAGGGTATTTTCTCCGGCTCATGTTCAACTTCTTTGGATCATGCGGTGTTGATTGTAGGCTATGATTCAGAAAATGGAGTAGAATACTGGATTGTGAAGAATTCATGGGGAACTCGTTGGGGAATGAATTTACATACACATGCGGCGAAACACCGGCGACTCCCAAGGGAGAGACATGTTGCTGTGCAAGACACTTTATTGGTATATGCATTTCATGGAAATGTTGTGGCTTATCATCTGCCGTCTGCTGCAAGGACAATCGCCGTTACTGCCCCCATGACTATCCTAAATGCAAATATGACGAGAACAAAGGCACGTGAGATTGAGGGCCCTTTCCACCATAAGCCGAAGGAGAAGAAAATGGCCGAAGAAGGACAAGTCATTGGCTGCCACACCGTTGAGGCCTGGAAGGAGCAGCTTGAGAAGGGCAGCGCATCCAAGAAACTGATTGTGGTGGATTTTACTGCTTCATGGTGCGGTCCATGCCGTTTCATTTCCCCAATTTTGGCAGAGATTGCTAAGAAGATGACCAATGTCATCTTTCTCAAGGTCGATGTGGATGAATTGAGGGCTGTTTCGGAGGAATGGGGCATCGAAGCTATGCCAACCTTCTTGTTCCTGAAAGAAGGCAAATTAGTGGATAAGGTTGTGGGTGCTAAGAAGGAGGAGTTGCAGTTGACCATAAATAAGCATGCAGCTGCCTGA 708 0.4675 MKGIFSGSCSTSLDHAVLIVGYDSENGVEYWIVKNSWGTRWGMNLHTHAAKHRRLPRERHVAVQDTLLVYAFHGNVVAYHLPSAARTIAVTAPMTILNANMTRTKAREIEGPFHHKPKEKKMAEEGQVIGCHTVEAWKEQLEKGSASKKLIVVDFTASWCGPCRFISPILAEIAKKMTNVIFLKVDVDELRAVSEEWGIEAMPTFLFLKEGKLVDKVVGAKKEELQLTINKHAAA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0951 235 Gene3D Glutaredoxin 109 235 - -
Lele04g0951 235 PRINTS Thioredoxin family signature 151 159 - -
Lele04g0951 235 PRINTS Thioredoxin family signature 159 168 - -
Lele04g0951 235 PRINTS Thioredoxin family signature 198 209 - -
Lele04g0951 235 FunFam Thioredoxin 127 234 - -
Lele04g0951 235 Pfam Papain family cysteine protease 2 50 IPR000668 GO:0006508|GO:0008234
Lele04g0951 235 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 13 23 IPR025660 -
Lele04g0951 235 SUPERFAMILY Thioredoxin-like 117 233 IPR036249 -
Lele04g0951 235 Gene3D Cysteine proteinases 1 53 - -
Lele04g0951 235 PANTHER THIOREDOXIN 128 231 - -
Lele04g0951 235 ProSiteProfiles Thioredoxin domain profile. 81 234 IPR013766 -
Lele04g0951 235 CDD TRX_family 139 226 - -
Lele04g0951 235 ProSitePatterns Thioredoxin family active site. 152 170 IPR017937 -
Lele04g0951 235 Pfam Thioredoxin 131 230 IPR013766 -
Lele04g0951 235 SUPERFAMILY Cysteine proteinases 3 44 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0951 Lele-ChrLele04 5865356 5872551 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0951 04 5865356 5872551 Lele04g0951 04 5865356 5872551 ECH
Lele01g0955 01 5515398 5517065 Lele04g0951 04 5865356 5872551 hybridization
Lele02g0957 02 5808112 5809794 Lele04g0951 04 5865356 5872551 hybridization