Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0768 ATGAAAACCCTAGCCTTATGGGCGAAGAAAACGGGAGGGAATATGGGGCACTTTGGCAACGGGCGACTTTTTGAATTCCAACCTCTGTCTCACGATATTTACGTAAGCGCCAATAGTGTCACTCCAACCAACACTATATATAAAAGACGATGCCAATCTCGATCGAAATCTGACACTCTAGGGTTTCTTCCACTTACTCTTCCAAGAAACCTAATGGCCGACGAAGCACAGTATTCATCGGTCACAGATACCACGTCTCACAAGCGCAAGTATGAAGAACCACAGCTCTCTCAATCAACTGATAGGCCCACTGGCTTCTCTGCGCCTATCGCCTCTACATCTCCCGACGGTTCTCACGCTCCGTCTCCCTCCTATAACAGCGTCCCTCCTCCGGCGGCAACTGGTATCGAGCTTGCCAAGCAGCGTGCTCAGGAGGTTGCTGCTCGCCTCTTAAACAGCAGTGGAGCAACTGGGTTGGATGCCAAGCGTTCCAAGGTTGAGAACGGTGCTTCAGGATTCGATTCCCACGACGTGAAGCCCCAGTACTCAGTACCATCAGCTGCTCCCATTTCTTATGCCTATCAGGGTACTAGCAAAAAGATAGACGTTCCAAATGGAAGGGTCGGCGTTATTATTGGTAAAGGTGGGGAGACAATAAAGTATCTTCAAACGCAGTCTGGAGCGAAGATCCAAGTTACCCGTGACATGGATGCAGACCCAAATTCTCTAACAAGGATGGTGGAACTTATGGGCACCCCTGATCAAATTGCTACTGCCGAGAAATTGATTAACGAAGTTCTTGCTGAGGCTGAAGTTGGAGGTTCTGGTATTGTTGGTAGGCGGCTGACTGGACAAGCTGGGTCTGAGCAATTTGTGATGAAAATTCCAAATAATAAAGTCGGACTTGTGATTGGAAAAGGAGGAGAAACAATAAAGAATATGCAAGCTCAGACTGGAGCAAGAATTCAGGTGATACCATTGCATCTTCCCCCAGGTGACGCATCGACTGAACGAACATTACAAATTGATGGAACCAGTGATCAAATTGAGTCTGCAAAACAGTTGGTTAATGGAGTCATTAGTGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGTTATCAACAACAAGGATACCAAGCCCGACCACCTACTAGCTGGGTTCCTCCTGGTGCTCCTATGCAACAACCTGGTTATGGCTATGTGCAACCTGGAGCATACTCTGGCCCATCACCCCAGTATAACATGCCTCAGCAACCATATCCTGGATATCCTCCTCAGTCATCTGGTGGATACTCCTCCAATTGGGACCAGTCCTCTGTACCACCTCAACAGTCAACTCATGATGGTGGTTATGATTACTATGGTCAACAGCAACAGCAAAATGCTGGGGGTCCTCCGCCTGCAGCTGATGGGACTGCTTATAATTATGGTCAGCCACCTTCATCTGGTTATAACCATCCTGGCCAGGGTTATCCTCAGGACAGCTATGGTGGGTACAGCGCAGCACCACAATCAGGGTACGGCCAGCCTCCCCCAGCTGTCCCAACTTCAATGTCCCAGCAAGGTTATGGTTCTAACCAGCAGCCAAGCCCAAACCCAGCTACCTATCCAGCTCAAGGAGCTGCACAGCCAGGTTACGGGATGCCTCCAACTTCTCAAGCAGCTTATGGCGGTCAACCCCAAGCACAGTCTGGTTATGGGGCCCCTCCACCTCAAAAGCCTAGTGGCACTCCTCCTGCTTATGGGCAGTCCGCACAATCTCCCAGCACAGCAGGAGGCTATGGTCAACCAGGATATCCTCCTGCTCAGCCCCCTTCTGGCTATGCTCAATCAGAATCTGGTCCACAAAGAGCTCCACCGCCATATGGTTCTGCAGCGCAACCAGGTTATGGTGCCCCACCATATGGTGCTCCTCCTGGTGGTCAGCCTGGTTATGGTCAGGCACCTCCATCATACAACAGTGGTTCTTATGGTGCCGGTTACACTCAACCTCCAGCATATTCTGCTGATGGTACACCAGCACAGGCTACCCAACAAGGTGGTGTTGCTAAAGCATCGCCTCAAAGTTGA 2073 0.5007 MKTLALWAKKTGGNMGHFGNGRLFEFQPLSHDIYVSANSVTPTNTIYKRRCQSRSKSDTLGFLPLTLPRNLMADEAQYSSVTDTTSHKRKYEEPQLSQSTDRPTGFSAPIASTSPDGSHAPSPSYNSVPPPAATGIELAKQRAQEVAARLLNSSGATGLDAKRSKVENGASGFDSHDVKPQYSVPSAAPISYAYQGTSKKIDVPNGRVGVIIGKGGETIKYLQTQSGAKIQVTRDMDADPNSLTRMVELMGTPDQIATAEKLINEVLAEAEVGGSGIVGRRLTGQAGSEQFVMKIPNNKVGLVIGKGGETIKNMQAQTGARIQVIPLHLPPGDASTERTLQIDGTSDQIESAKQLVNGVISENRLRNPSMSGGYQQQGYQARPPTSWVPPGAPMQQPGYGYVQPGAYSGPSPQYNMPQQPYPGYPPQSSGGYSSNWDQSSVPPQQSTHDGGYDYYGQQQQQNAGGPPPAADGTAYNYGQPPSSGYNHPGQGYPQDSYGGYSAAPQSGYGQPPPAVPTSMSQQGYGSNQQPSPNPATYPAQGAAQPGYGMPPTSQAAYGGQPQAQSGYGAPPPQKPSGTPPAYGQSAQSPSTAGGYGQPGYPPAQPPSGYAQSESGPQRAPPPYGSAAQPGYGAPPYGAPPGGQPGYGQAPPSYNSGSYGAGYTQPPAYSADGTPAQATQQGGVAKASPQS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0768 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 285 367 IPR036612 GO:0003723
Lele04g0768 690 MobiDBLite consensus disorder prediction 648 662 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 362 383 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 97 123 - -
Lele04g0768 690 SMART kh_6 195 268 IPR004087 GO:0003676
Lele04g0768 690 SMART kh_6 287 361 IPR004087 GO:0003676
Lele04g0768 690 ProSiteProfiles Type-1 KH domain profile. 196 263 - -
Lele04g0768 690 Pfam KH domain 292 357 IPR004088 GO:0003723
Lele04g0768 690 Pfam KH domain 200 265 IPR004088 GO:0003723
Lele04g0768 690 MobiDBLite consensus disorder prediction 78 132 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 669 690 - -
Lele04g0768 690 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 189 504 - -
Lele04g0768 690 Gene3D K Homology domain, type 1 192 285 IPR036612 GO:0003723
Lele04g0768 690 Gene3D K Homology domain, type 1 286 383 IPR036612 GO:0003723
Lele04g0768 690 MobiDBLite consensus disorder prediction 579 594 - -
Lele04g0768 690 ProSiteProfiles Type-1 KH domain profile. 288 356 - -
Lele04g0768 690 CDD KH-I 198 263 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 362 690 - -
Lele04g0768 690 CDD KH-I 291 356 - -
Lele04g0768 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 274 IPR036612 GO:0003723
Lele04g0768 690 FunFam KH domain-containing protein 283 383 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 476 490 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 555 571 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 512 538 - -
Lele04g0768 690 MobiDBLite consensus disorder prediction 425 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0768 Lele-ChrLele04 4671704 4680140 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0768 04 4671704 4680140 Lele04g0768 04 4671704 4680140 ECH
Lele01g0774 01 4481539 4489205 Lele04g0768 04 4671704 4680140 hybridization
Lele02g0751 02 4527746 4532965 Lele04g0768 04 4671704 4680140 hybridization