Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0600 ATGCCGCTCGGAGAAAGGGCTGGAGATAACACCGAATCACGGTATTGCGGTGTAGAGACGGAGTTCGATGTTGACATGCCATACTTGCTGTCTCACCATCTCGTTTCTGGGGGATTCGATTTCGTTGTTGCTCCTCTGATGGATCCTGCATATCGGCCGAGCTTAGTGCAGAAGGATAGTTTTGGTTCTGCTGTTCTTCCATTTGCTGGATCAGACTTAGTCGTGAGCCCTTCACAGTGGAGTACTCGTGTAGTGGGAAAAATTAGCTCATGGATAGATTTGGATTCAGGGGACGAAACCCTCAGGATGGACTCTGAAACCACTCTCAGACAAGAAATAGCTTGGGCTTCTCATCTCTCTCTACAGGCTTGCCTTCTACCAGCTCCCAAGAGAACATCTTGTGCTAATTATGCTAGATGTGTGAATCAAATCTTGCAGAACCTAAATCATTTGCAGCTGTTTCTTAGGATTCCATTGGTCATGTCTGATGATGATTCCATGGGTGCCAATTCTGAAACTTCAATCGATTCTTGGGAAACTTGGAATTCATTTCGTCTTCTCTCCACGATATGCTCAATGTTCTTGTTTATTAGGAGTACCTTACCATCAGCGAACTCACTTGGACGCTGGTTTGGGGAGCCTGTTAGATCAGCTATAATAAATACTGATTGCTTTTTGACTAATGCTCGTGGTTATCCATGCCTCTCAAAGCGCCACCAGATGCTAATTACTCGTTTTCTTAACCATTCTATACAGTCTGAGCTTATCCCTACAATCCCGGGATCTTGTTCATCTTTTTTGGGATACTATATAGACCTTATTAGCAGATACTTACTGATCAAATCACATTCAAGCCTTCCATTCTCCCTTCAAAAGGTACTGAATTTTCTTGAAACGTCTGTCCAGATAATCATATCCGGAAAATCAGTTCATCCAAGAGCAAGTGTGGATCCAGATGCTTCTCATGCTGCTGTGGCTTTGAGTGTTCTTTTCCCAGAAAGACATCCTTTGAGGCCCTATCTGGACTATGTTGCTTATCTATACCAAAGAATGGACCCAATTCCTGAGCAAGAACGCTTTGAGGGACTTTTTACAGGCACCCTTGCAAGTAAAGCATTGCTGGATAGGGTTCCTGATGAAAAGGTGTCTGAAATTACCACTGTATTGATGGTTGTTGGTGCTGGGCGTGGGCCTCTTGTTCGGGCGTCACTAGAGGCAGCTGAAGAGACTGGGAGGAGGCTAAAAGTATATGCAGTGGAAAAGAATCCAAATGCAGTTAGTTTGATTAGGTTAGAGGGCTGGGAAGATTCAGTTACCATAGTTTCAAGTGACATGCGCCACTGGAATGCCCCTGAAAAGGCCGACATATTGGTAAGTGAATTGCTAGGTTCTTTTGGTGACAATGAGCTGTCTCCTGAGTGCCTTGATGGAGCCCAGAGGTTTTTGAAGCAAGATGGAATTTCAATACCATCTTCGTACACAAGTTTCATCCAACCAGTGATAGCTTCAAAATTATATAATGATGTTAAGGCACATAAAGATATAGCACACTTTGAAACTGCTTATGTCGTGAAATTACACAATGTGGCTAGGCTGGCACCATCTCAACCTGTTTTTACATTTACTCATCCAAAACCCTTAGATATGGAAAGCAACCATCGATATAAGAAGTTGCAATTTGTGATACCTAATGACACTGGATCAGCTATGGTCCATGGGTTTGCTGGCTACTTTGATGCTACCCTTTACAAAGATGTGCATCTTGGAATTGAACCCTCAACAGCAACGCCAAATATGTTCAGCTGGTTTGCAATATTTTTCCCATTAAGGGTACCCATTTGTGTGGAGCGGGGCGATACTTTAGAAGTACATTTCTGGCGCTGTTGTGGTTCAACAAAGGTTTGGTATGAGTGGTGCGTTACATCTCCCTCTCCGTCTCCAATTCACAATAGCAATGGACGTTCCTACTGGGTTGGCCTTTAG 1983 0.4362 MPLGERAGDNTESRYCGVETEFDVDMPYLLSHHLVSGGFDFVVAPLMDPAYRPSLVQKDSFGSAVLPFAGSDLVVSPSQWSTRVVGKISSWIDLDSGDETLRMDSETTLRQEIAWASHLSLQACLLPAPKRTSCANYARCVNQILQNLNHLQLFLRIPLVMSDDDSMGANSETSIDSWETWNSFRLLSTICSMFLFIRSTLPSANSLGRWFGEPVRSAIINTDCFLTNARGYPCLSKRHQMLITRFLNHSIQSELIPTIPGSCSSFLGYYIDLISRYLLIKSHSSLPFSLQKVLNFLETSVQIIISGKSVHPRASVDPDASHAAVALSVLFPERHPLRPYLDYVAYLYQRMDPIPEQERFEGLFTGTLASKALLDRVPDEKVSEITTVLMVVGAGRGPLVRASLEAAEETGRRLKVYAVEKNPNAVSLIRLEGWEDSVTIVSSDMRHWNAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVIASKLYNDVKAHKDIAHFETAYVVKLHNVARLAPSQPVFTFTHPKPLDMESNHRYKKLQFVIPNDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRVPICVERGDTLEVHFWRCCGSTKVWYEWCVTSPSPSPIHNSNGRSYWVGL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0600 660 FunFam Protein arginine N-methyltransferase 5 492 660 - -
Lele04g0600 660 Pfam PRMT5 TIM barrel domain 38 349 IPR035247 -
Lele04g0600 660 Pfam PRMT5 oligomerisation domain 492 658 IPR035248 -
Lele04g0600 660 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 388 659 IPR029063 -
Lele04g0600 660 Gene3D - 492 660 - -
Lele04g0600 660 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 370 660 IPR025799 GO:0016274|GO:0018216
Lele04g0600 660 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 333 638 IPR025799 GO:0016274|GO:0018216
Lele04g0600 660 Gene3D Vaccinia Virus protein VP39 330 491 IPR029063 -
Lele04g0600 660 Gene3D - 15 259 - -
Lele04g0600 660 PIRSF PRMT5 3 261 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lele04g0600 660 PIRSF PRMT5 366 660 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lele04g0600 660 PIRSF PRMT5 277 370 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lele04g0600 660 Pfam PRMT5 arginine-N-methyltransferase 370 489 IPR035075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0600 Lele-ChrLele04 3626093 3634127 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0600 04 3626093 3634127 Lele04g0600 04 3626093 3634127 ECH
Lele01g0590 01 3466867 3474474 Lele04g0600 04 3626093 3634127 hybridization
Lele02g0582 02 3479632 3490421 Lele04g0600 04 3626093 3634127 hybridization