Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0565 ATGTCTTCCTCACATCTCCCCGCAACAACAGACACCATTGCACAGGCACTCGAGGCCAAAAACCCATCTGAGGCCATCTCTATTCTTTATCGTGTACTTGAGAACCCCTCTGCATCTCCGGAAGCTCTGCGCATTAAAGAGCAGGCCATCACAAACCTCTCCGATCTTCTTAGGCAAGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCTTTAATCCCTAAGGCAAAAACTGCAAAAATAGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCAGTGGACTCGGGCTGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGGCTTGCAGCTCTTCTTATGGAAAATAAGGAGTATGCAGAAGCTTTGACTCTCCTTACTGGCCTGGTCAAGGAAGTTAGAAGATTGGATGACAAACTTCTTCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGGAACCTACCAAAGGCTAAAGCTGCCCTCACAGCAGCAAGAACAGCTGCTAATGCTATTTACGTGCCCCCTGCTCAGCAAGGTGCCATTGATCTGCAAAGTGGGACTCTTCACGCAGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAATGCACTTGAAGACCCCAAGGCTGTTTTTAGCCTAAAATACATGTTGTTGTGTAAGATCATGGTGAGTCAAGCTGATGATGTGGTGAGCATTATATCTTCTAAGGCAGGCCTCCAATATGTTGGCCCTGACTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCTAAGCGTTCCCTTAAGTTGTTTGAGACTGCTTTGCGGGACTACAGGTCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCCCTTTATGATACACTTCTGGAGCAGAACCTTTGCAGATTAATTGAGCCATTCTCAAGGGTCGAGATTGCGCATATTGCTGAGCTAATTGAACTTCCCATTGATAATGTGGAGCGGAAGTTGTCCCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCGTCATATTTGATGATCCCAAGAGTGACGCCATTTATCCTGACACCTTGGAAACCATTTCCAACATAGGGAAGGTTGTGGACAGCCTTTATGTTAGGTCTGCCAAAATCATGGCATAA 1269 0.4571 MSSSHLPATTDTIAQALEAKNPSEAISILYRVLENPSASPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGTLHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVVSIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYRSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDNVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKSDAIYPDTLETISNIGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0565 422 Gene3D - 46 421 - -
Lele04g0565 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Lele04g0565 422 Coils Coil 46 66 - -
Lele04g0565 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Lele04g0565 422 Coils Coil 126 146 - -
Lele04g0565 422 Pfam PCI domain 285 386 IPR000717 -
Lele04g0565 422 SMART PINT_4 320 403 IPR000717 -
Lele04g0565 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Lele04g0565 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Lele04g0565 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Lele04g0565 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Lele04g0565 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Lele04g0565 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 34 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0565 Lele-ChrLele04 3431489 3432757 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0552 01 3283525 3286019 Lele04g0565 04 3431489 3432757 hybridization
Lele02g0547 02 3295999 3297735 Lele04g0565 04 3431489 3432757 hybridization