Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0547 ATGTTTTTTCTTGTCACAAACTTCTTGGGCTTGAAGAAGTTTGTGGAAGCATTAAAGATGTCTTCCTCACATCTCCCCGCAACAACAGACACTATTGCACAGGCACTCGAGGCCAAAAACCCATCTGAGGCCATCTCTATTCTTTATCATGTACTTGAGAACCCCTCTGCATCTCCGGAAGCTCTGCGCATTAAAGAGCAGGCCATCACAAACCTCTCCGATCTTCTTAGGCAAGAGAATAGGGCAGAGGATCTTCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCTTTAATCCCCAAGGCAAAAACTGCAAAAATAGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCAGTGGACTCGAGCTGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGGCTTGCAGCTCTTCTTATGGAAAATAAGGAGTATGCAGAAGCTTTGACTCTCCTTACTGGCCTGGTCAAAGAGGTTAGAAGATTGGATGACAAACTTCTTCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGGAACCTACCAAAGGCTAAAGCTGCCCTCACAGCAGCAAGAACAGCTGCTAATGCTATTTACGTGCCCCCTGCTCAGCAAGGTGCCATTGATCTGCAAAGTGGGATTCTTCACGCAGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAATGCACTTGAAGACCCCAAGGCTGTTTTTAGCCTAAAATACATGTTGTTGTGTAAGATCATGGTGAGTCAAGCTGATGATGTGGTGGGCATTATATCTTCTAAAGCAGGCCTCCAATATGTTGGTCCTGACTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCTAAGCGTTCCCTTAAGTTGTTTGAAACTGCTTTGCGGGACTACAGGGCACAATTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCCCTTTATGATACACTTCTGGAGCAGAACCTTTGCAGATTAATTGAGCCATTCTCAAGGGTCGAGATTGCGCATATTGCTGAGCTAATTGAACTTCCCATTGATAATGTGGAGCGGAAGTTATCCCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGATGATCCCAAGAGTGACGCCATTTATCCTGACACCTTGGAAACCATTTCCAACATAGGGAAGGTTGTGGACAGCCTTTATGTTAGGTCTGCCAAAATCATGGCATAA 1326 0.4465 MFFLVTNFLGLKKFVEALKMSSSHLPATTDTIAQALEAKNPSEAISILYHVLENPSASPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVVGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYRAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDNVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKSDAIYPDTLETISNIGKVVDSLYVRSAKIMA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0547 441 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 339 422 - -
Lele02g0547 441 SMART PINT_4 339 422 IPR000717 -
Lele02g0547 441 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 33 147 IPR040773 -
Lele02g0547 441 FunFam 26S proteasome non-ATPase regulatory subunit 11 65 440 - -
Lele02g0547 441 SUPERFAMILY TPR-like 148 342 IPR011990 GO:0005515
Lele02g0547 441 Pfam PCI domain 304 405 IPR000717 -
Lele02g0547 441 SUPERFAMILY "Winged helix" DNA-binding domain 333 415 IPR036390 -
Lele02g0547 441 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 53 437 - -
Lele02g0547 441 Coils Coil 145 165 - -
Lele02g0547 441 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 412 437 IPR040780 -
Lele02g0547 441 Coils Coil 65 85 - -
Lele02g0547 441 ProSiteProfiles PCI domain profile. 242 410 IPR000717 -
Lele02g0547 441 Gene3D - 65 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0547 Lele-ChrLele02 3295999 3297735 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0547 02 3295999 3297735 Lele03g0557 03 3305255 3307676 hybridization
Lele02g0547 02 3295999 3297735 Lele04g0565 04 3431489 3432757 hybridization