Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0552 ATGTGTGGCGGTACGCTGCGTTTTAAATCCCTACCCCACATTCCAAGTTCTCCTATTTCCTTCGACATTCACGAATCACGACTCTCATCCAGCTCTCGGCCTCGCTCGGCTCCTCACCCTCAGATCGACGACACTCCTTCAGTCTTCCCTTTACAGGGTTGCCGGCTGCCGAATCCCCTCTCCGATCTTCTTTCGCTGCTCACCATCGTCGAGAAGTTTGTGGAAGCAGTAAAGATGTCTTCCTCACATCTCCCCGCAACAACAGAGACTATTGCACAGGCACTGGAAGCCAAAAACCCATCTGAGGCCATCTCTATTCTTTATCGTGTGCTTGAGAGCCCCTCTGCATCTCCTGAAGCTCTGCGCATTAAAGAGCAGGCCATCACAAACCTCTCCGATCTTCTTAGGCAAGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCTTTAATCCCTAAGGCAAAAACTGCAAAAATAGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCTGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCAGTGGACTCGAGCTGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGACTTGCAGCTCTTCTTATGGAAAATAAGGAGTATGCAGAAGCTTTGACTCTCCTTACTGGCCTGGTCAAAGAGGTTAGAAGATTGGATGACAAACTTCTTCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGGAACCTACCAAAGGCAAAAGCTGCCCTCACAGCAGCAAGAACAGCTGCTAATGCTATTTACGTGCCCCCTGCTCAGCAAGGTGCCATTGATTTGCAAAGTGGGATTCTTCACGCAGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAACGCACTTGAAGACCCCAAGGCTGTTTTTAGCCTAAAATACATGTTGTTGTGTAAGATTATGGTGAGTCAAGCTGATGATGTGGTGGGCATTATATCTTCTAAAGCAGGCCTCCAATATGTTGGTCCTGACTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCTAAGCGTTCCCTTAAGTTGTTTGAAACTGCTTTGCGGGACTACAAGGCACAATTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCCCTTTATGATACCCTTCTGGAGCAGAACCTTTGCAGATTAATTGAGCCATTCTCAAGGGTCGAGATTGCGCATATTGCTGAGCTAATTGAACTTCCCATTGATAATGTGGAGCGGAAGTTGTCCCAAATGATTTTGGACAAGAAGTTTGCAGGGACATTGGATCAAGGTGCTGGATGCCTCGTCATATTTGATGATCCCAAGAGTGACGCAATTTATCCTGCAACCTTGGAAACCATTTCCAACATAGGGAAGGTTGTGGACAGCCTTTATGTTAGGTCTGCCAAAATCATGGCATGA 1503 0.4637 MCGGTLRFKSLPHIPSSPISFDIHESRLSSSSRPRSAPHPQIDDTPSVFPLQGCRLPNPLSDLLSLLTIVEKFVEAVKMSSSHLPATTETIAQALEAKNPSEAISILYRVLESPSASPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVVGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDNVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKSDAIYPATLETISNIGKVVDSLYVRSAKIMA 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0552 500 Gene3D - 124 499 - -
Lele01g0552 500 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 92 206 IPR040773 -
Lele01g0552 500 MobiDBLite consensus disorder prediction 25 46 - -
Lele01g0552 500 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 471 496 IPR040780 -
Lele01g0552 500 Pfam PCI domain 363 464 IPR000717 -
Lele01g0552 500 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 398 481 - -
Lele01g0552 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 93 496 - -
Lele01g0552 500 SUPERFAMILY TPR-like 207 401 IPR011990 GO:0005515
Lele01g0552 500 FunFam 26S proteasome non-ATPase regulatory subunit 11 124 499 - -
Lele01g0552 500 ProSiteProfiles PCI domain profile. 301 469 IPR000717 -
Lele01g0552 500 SMART PINT_4 398 481 IPR000717 -
Lele01g0552 500 Coils Coil 124 144 - -
Lele01g0552 500 SUPERFAMILY "Winged helix" DNA-binding domain 392 474 IPR036390 -
Lele01g0552 500 Coils Coil 204 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0552 Lele-ChrLele01 3283525 3286019 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0552 01 3283525 3286019 Lele03g0557 03 3305255 3307676 hybridization
Lele01g0552 01 3283525 3286019 Lele04g0565 04 3431489 3432757 hybridization