Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0540 ATGGTGAATCCTATGGTAGAACGAGCTACGAGCGACATGCTCATTGGTCCTGATTGGGCGATGAATATCGAGATCTGTGACATGCTGAATAGCGACCCCGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAGAATTCAAAAGTTCAACTTCTTGCACTAACTCTACTGGAGACAATCATAAAGAATTGTGGGGACATTGTTCATATGCATGTCGCTGAAAGAGATCTGCTTCATGAGATGGTAAAAATAGCAAAGAAGAAGCCTGATTTTCACGTCAGAGAGAAGATCCTGATACTCATAGATACTTGGCAAGAAGCTTTTGGAGGACCAAGGGCTAGATACCCGCAGTATTATGCTGCATACCAGGAACTGCTGCGTGCTGGGGCAGTATTCCCTAAGAGATCTGAACAATCTGCACCTGTGTTCACACCTCCACAAACACAACCACTGTCATCATATCCTCAAAATTTAAGCAACTCTGAGGCCTGTCAGGATACAGCCGAGTCCTCTGCAGAGCCTGAGTTTCCAACTCTGAGTTTGAGCGAAATTCAGAATGCTCGTGGTATTATGGATGTTCTTGCAGAAATGCTCAGTGCCATAGAACCAAGTAACAAAGAAGGTCTTAGGCAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACCTACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTCGGATGAAGCACTGCTATGCCAAGGTCTAGCTCTCAATGACGACCTGCAGCGAGTACTAGCAAAGCATGAAGCCATTGCTTCAGGTGTTCCTGTTGCAAATCAAACAGAGAAAGTGAAGTCTGAGCCTGCTGGAGCACTTGTAGATGTTGGTCCTTTGGTTGATAATGGAGATGCTAGCAAACAAATTGATGGGAGTTCTAGTGCCGAAAGTGGGTCCCAAACGTTGAATCAATTATTGCTTCCTGCTCCTCCCACTTCTAATGGCTCAGCTCTTCATGCTAAGGCTGATCCCAAAATGGACTTGCTCAGTGGTGATGATTATACCTCACCAAAAGCGGAGACTTCACTTGCTCTTGTTTCTGCGGGAGAACAGCAGCCAGCAAATCCCGTGTCTGAGCAGAATGCCCTTGTTCTTTTTGATATATTTTCAAATGGAAACAGTGAACTGACTTCCACACAGCCCACCCAGCCGACTAATGTTGGTGGACAAACCAGTCCATTAGCCCCCCATGGTCAACAACAGCAGACAGTCATACCTGCACAAAGTGCATTTTATGCCAATGGAAGCATGCCTAATGTGGGGTCACCTCATTTTGAGCAACCACTTTACTCACAAAGCACAGGTCCTGCCTGGAATGGTCACGTTGCCCAGCAGCAGCAGCAACCATCGGCTTCACCAGTTTATGGTGCGCAAAGCAGGGAATCATTGCCACCACCCCCGTGGGAAGCTCAACCAACAGATAACAGTAGTCCAGTAGCATGTAGCAATTATCCCCCATCACCGCAAATCCCTCAAGTGGTTATGACGCATCTTCAGAGTGGTGCACATACTCAGGGAATTCCTGCATTGGGGAATGACCAAATTGGCATGTATATGCAGCCCAATGCTAACAGCCCTTTGTCGCCCATGAATAGCCATGCTTTTCACAGCAATCCAATGGGCTTGCACCCCCAGCATATTCAGGGTGGCGCAGGACCCTATATGGGTATGGTTTCTCCTCAAATGCAAGCTGCTCCTGTGGCTATGTATCCTCAACAGATGTATGGCAACCAATTCTCGGGATATGGCTACGGTCAGCAACAAGGGGTCCAATACCTCGAGCAGCAAATGTATGGCCTATCTGTTAGAGATGATAATGGTTTGAGAAGGCCCTACCAGGTTTCTTCCTCGTCTTATGTGCCACCTGGCAGACCTTCCAAACCAGAGGACAAGTTATTTGGGGACCTTGTTGACATGGCAAAAGTCAAATCAAAACCCACACCAGGTCGAGCTGGTAGCATATGTGCATTCGCAACTTTTTGGAACTTCGAAGAAGCGGATCCATTTTTCTTCGTCGACGAACAAGCATTCCACACTTGTTCGAGCTCGCTGTTGGACGCCGTCCATCGTTATCAGCCCTGCGTGGTTGTTCTCCGGCAGGTAGTGAAGAAGTGGCTTGGAGGAGTTGCCTGA 2175 0.474 MVNPMVERATSDMLIGPDWAMNIEICDMLNSDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDLLHEMVKIAKKKPDFHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPKRSEQSAPVFTPPQTQPLSSYPQNLSNSEACQDTAESSAEPEFPTLSLSEIQNARGIMDVLAEMLSAIEPSNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDEALLCQGLALNDDLQRVLAKHEAIASGVPVANQTEKVKSEPAGALVDVGPLVDNGDASKQIDGSSSAESGSQTLNQLLLPAPPTSNGSALHAKADPKMDLLSGDDYTSPKAETSLALVSAGEQQPANPVSEQNALVLFDIFSNGNSELTSTQPTQPTNVGGQTSPLAPHGQQQQTVIPAQSAFYANGSMPNVGSPHFEQPLYSQSTGPAWNGHVAQQQQQPSASPVYGAQSRESLPPPPWEAQPTDNSSPVACSNYPPSPQIPQVVMTHLQSGAHTQGIPALGNDQIGMYMQPNANSPLSPMNSHAFHSNPMGLHPQHIQGGAGPYMGMVSPQMQAAPVAMYPQQMYGNQFSGYGYGQQQGVQYLEQQMYGLSVRDDNGLRRPYQVSSSSYVPPGRPSKPEDKLFGDLVDMAKVKSKPTPGRAGSICAFATFWNFEEADPFFFVDEQAFHTCSSSLLDAVHRYQPCVVVLRQVVKKWLGGVA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0540 724 FunFam TOM1-like protein 2 1 148 - -
Lele04g0540 724 PANTHER TOM1-LIKE PROTEIN 1 659 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele04g0540 724 FunFam TOM1-like protein 2 182 272 - -
Lele04g0540 724 MobiDBLite consensus disorder prediction 145 181 - -
Lele04g0540 724 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Lele04g0540 724 MobiDBLite consensus disorder prediction 142 181 - -
Lele04g0540 724 MobiDBLite consensus disorder prediction 439 471 - -
Lele04g0540 724 CDD VHS 2 132 - -
Lele04g0540 724 CDD GAT_GGA_like_plant 188 266 - -
Lele04g0540 724 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lele04g0540 724 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Lele04g0540 724 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Lele04g0540 724 MobiDBLite consensus disorder prediction 429 496 - -
Lele04g0540 724 Gene3D - 183 272 IPR038425 -
Lele04g0540 724 SUPERFAMILY GAT-like domain 139 269 - -
Lele04g0540 724 Pfam VHS domain 5 129 IPR002014 GO:0035091|GO:0043130
Lele04g0540 724 Gene3D - 1 148 IPR008942 -
Lele04g0540 724 MobiDBLite consensus disorder prediction 388 411 - -
Lele04g0540 724 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0540 Lele-ChrLele04 3263357 3276383 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0540 04 3263357 3276383 Lele04g0540 04 3263357 3276383 ECH
Lele01g0529 01 3163306 3172824 Lele04g0540 04 3263357 3276383 hybridization
Lele02g0519 02 3141060 3146555 Lele04g0540 04 3263357 3276383 hybridization