Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0520 ATGGAGGACGCTGCGAATTTTCCATACTCCGGCAATTTATCTCGTAAAGTAGTCGCCGTAGCTGCCGGCGAAGCGCATACTCTAGCTCTAACCGGGGATGGGTGTGTATATTCTTGGGGAAGAGGAATATTGGGGCGACTTGGGCGAGGCTCAGAAGAGGACGAGTTTTTTCCTGTTCAGGTCAAGTTTGAGAACCCCGATTCCTCAGGAGACACTATCAAAATTCTGGGAATTGCTGCCGGTGCCTATCACAGTCTTGCTCTTGCAGTGGATATAATAGAGATGAAACAACATGCAATATCTAGTGGACTGCAGTCTGATAACACTGAATACAATAAATCACAACTTTCTACTTCTATTGTTCTGTATGCTTGTTGGTTTGTATCATTCAATTATATCCTTGACTATTGTACGGATGGTCAACTTGGTGTTAACGAAGAGGACTCCCATGACTCTAGTGGAGACAAGTCTCTAATTCCCTGCCTATTGAACAAGTTTCTTGAGTTGCACCCTCCTGACTCTTCAACAGACACGCCTGAAGAAGAAAGTAAGGCTTCACTAAAGATACGTTCCGTCAAAGCAGGAGGAATGATGTCTTTGGCTATTGATAACCTAGGGGCCCTATGGGTGTGGGGAAACTGCCCACAGAAAAGCAAAGAAGGAGGGTTCTCTCTTGTGAGCAGTTTCATTCCCACACCGGTATGGGATTTTCACGGCCATACTGTTGTCAAGATTGCATGTGGGAATGAGCATGTTGTGGCACTAGTTACTGCAGGAGAATCATACATAGGCGAAGACCTCGTGTGCTACTCTTGGGGTAATAACAGCCATGGTCAATTAGGCTTGGGGGATAGGGAGAGCAGGCCACAACCAGAAGTTTTAAAAGCATTTGACCAGGAGTCCCCCTGGGCAATTTATGAAGTAGCTTGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAGAAGAGCCCCAGTGACACATCAGCAAGCAAGTGCTGGACGTTTGGCCTCGGGGATAATGGGCAACTTGGGCATGGAACCACGCAAAGCGAATTGCTTCCCATGCCGGTCAAAGAATTGCCACAGCACGTACATCTAATTTCTGTGGACTGTGGCTTGTTTCATACTAGCGTTGTTTCATCAGCTGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGTCTGTGCCCTGATGCTACTTTCACTGGAACTGATTCTGGGGACGCTCTCTCTCCCCTCCTTATCTTTTGTGCGCCACATCAGCCTAGGTTTCCAGAGCCGATCCAAGTTGCTTGTGGAGCTGCGCATACCGTTGTCGTTGCACAGGAGGGATATAAGATTTGGTCTTGGGGTAGGGGAAGGAGTGGCGTTCTGGGGAATGGCAAGGCAGTGGATTTTTACACTCCCACAATAGTGTTATGGCCTCCGCTGATAGAGGATTTCATGCAAGAAGAACCGGAGAGTACTGGAGAGAAAGATAAGATGACAGAAAAAGAGACCGAAATGGATGATAAATTAACCTCAGCATTGGATGAACTGAAGCAGCTTCAGACAAGGTTTTCTGTGATGGAGAGATATGCCAGTATACTTCATGGTTCAATATTTGGAAAGCCTTTTGATGAGCGTGATATCCCAGCGTCACTGATTAACTCAGGTGTATTCGACATTGCAAAGGAATGGGAGAGCATGTTAGAGGAAGCAGATCGTAGTAAGCTAATTAGGTTGGAAATGTTCTACAGAAATATGCTTTCTGGTGTGAAAGATAAGCTGATGAAGAGAAGGATCAAGGAGATTATAAAGGAATGCCTCCAGTCTTCAGAATTTGCAAAATAG 1836 0.4624 MEDAANFPYSGNLSRKVVAVAAGEAHTLALTGDGCVYSWGRGILGRLGRGSEEDEFFPVQVKFENPDSSGDTIKILGIAAGAYHSLALAVDIIEMKQHAISSGLQSDNTEYNKSQLSTSIVLYACWFVSFNYILDYCTDGQLGVNEEDSHDSSGDKSLIPCLLNKFLELHPPDSSTDTPEEESKASLKIRSVKAGGMMSLAIDNLGALWVWGNCPQKSKEGGFSLVSSFIPTPVWDFHGHTVVKIACGNEHVVALVTAGESYIGEDLVCYSWGNNSHGQLGLGDRESRPQPEVLKAFDQESPWAIYEVACGAFHTALLTHKKSPSDTSASKCWTFGLGDNGQLGHGTTQSELLPMPVKELPQHVHLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDATFTGTDSGDALSPLLIFCAPHQPRFPEPIQVACGAAHTVVVAQEGYKIWSWGRGRSGVLGNGKAVDFYTPTIVLWPPLIEDFMQEEPESTGEKDKMTEKETEMDDKLTSALDELKQLQTRFSVMERYASILHGSIFGKPFDERDIPASLINSGVFDIAKEWESMLEEADRSKLIRLEMFYRNMLSGVKDKLMKRRIKEIIKECLQSSEFAK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0520 611 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Lele04g0520 611 PRINTS Chromosome condensation regulator RCC1 signature 17 30 IPR000408 -
Lele04g0520 611 PRINTS Chromosome condensation regulator RCC1 signature 325 346 IPR000408 -
Lele04g0520 611 Pfam Regulator of chromosome condensation (RCC1) repeat 270 318 IPR000408 -
Lele04g0520 611 Pfam Regulator of chromosome condensation (RCC1) repeat 383 441 IPR000408 -
Lele04g0520 611 Pfam Regulator of chromosome condensation (RCC1) repeat 332 378 IPR000408 -
Lele04g0520 611 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
Lele04g0520 611 SUPERFAMILY RCC1/BLIP-II 188 476 IPR009091 -
Lele04g0520 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 258 IPR000408 -
Lele04g0520 611 Gene3D - 265 481 IPR009091 -
Lele04g0520 611 Gene3D - 5 264 IPR009091 -
Lele04g0520 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 382 IPR000408 -
Lele04g0520 611 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 165 - -
Lele04g0520 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 444 IPR000408 -
Lele04g0520 611 SUPERFAMILY RCC1/BLIP-II 8 89 IPR009091 -
Lele04g0520 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Lele04g0520 611 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 308 318 IPR000408 -
Lele04g0520 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 321 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0520 Lele-ChrLele04 3141434 3144227 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0520 04 3141434 3144227 Lele04g0520 04 3141434 3144227 ECH
Lele01g0514 01 3050152 3052939 Lele04g0520 04 3141434 3144227 hybridization
Lele02g0500 02 3014081 3016853 Lele04g0520 04 3141434 3144227 hybridization