Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g0514 | ATGGAGGACGCTGCGAATTTTCCAAACTCCGGCAATTTATCTCGTAAAGTAGTCGCCGTAGCTACCGGCGAAGCACATACTCTAGCTCTAACCGGGGATGGGTGTGTATATTCCTGGGGAAGAGGAATATTGGGGCGACTTGGGCGAGGCTCAGAAGAGGACGAGCTTTTTCCTGTTCAGGTCAAGTTTGAGAACCCCAATTCATCAGGAGACACTATCAAAATCGTGGGAATTGCTGCCGGTGCCTATCATAGTCTTGCTCTCGCAGTCGGATACAAAAAAATCACTACTGTCTACTTCTATTGTTCTGTATGTTTGTTCGTATTATTCAACTATATCATTGACTATTGTATGGATGGTCAACTCGGTGTTAACGAAGAGGAGTCCCATGACTCTAAGGGAGATAAGTCTCTAGTTCCCTGCCTATTAAACAAGTTTCTTGAGTTGCACCCTCCTGACTCTTCAACAGACACACCAGAAGAAGAAAGTAAGGCATCACTAAAGATATGTTTTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCTAGGGGCCCTATGGATGTGGGGAAACTGCCCACAGAAAAGCAAAGAAGGAGGGTTCTCTCCTGTGAGCAGTTTCATTCCCACACCAGTAAGGGATTTCCACGGCCATACTGTTGCCAAGATTGCATGTGGGAATGAGCATGTTGTGGCATTACTGACCTCAGGAGAATCATACGTAGGCGAAGACCTCGTGTGCTACTCTTGGGGTAATAACAGCTATGGTCAATTAGGCTTGGGGGATAGGGAGAGCAGGCCACAACCAGAATTTGTAAAATCATTTGACCAGGAGTCCCCCTGGGCAATTTATGAGGTAGCTTGTGGTGCCTTTCACACCGCTTTGCTCACTCACAAAAAGAGTCCCAGTGATACATCAGCAAGCATGTGCTGGACGTTTGGCCTCGGGGATAACGGGCAACTCGGGCATGGAACCACGCAAAGCGAATTGCTTCCTACGCCGGTCAAAGAATTGCCACAGCATGTGCATCTAATTTCTGTTGACTGTGGCCTGTTTCATACTAGTGTTGTTTCATCATCTGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCCTGTGCCCTGATGCTACTTTCACTGGAACTGATTCGGGGGACGCGCTCTCTCCCCTTCTTATCTCATGCGCGCCACATCAGCCTAGGTTTCCAGAGCCGATCCAAGTTGCTTGTGGAGCTGCGCATACGGTTATCGTTGCGCAGGAGGGATATAAGATTTGGTCTTGGGGTAGGGGAAGGAGTGGGGTTCTGGGAAATGGTAAGGCAGTGGATTTTTACACTCCCACACTAGTGTTATGGCCTCAACTGATAGAGGATTTCAAGCAAGAGGAGCTGAAGAGTACTGGAGAGAAAGATAAGACGACAGAAAAAGAGACCGAAATGGATGAGAAATTAGCGTCAGCATTGAATGAACTGAAGCAGCTTCAGACAAGGTTTTCGGTGATGGAGAGATATGCCGGTATACTTCATGGTTCAATATTTGGAAAACCTGTTGATGAACGTGACATCCCAGTGTCATTGAGTAACTCAGGTGTATTCAACATTGCAAAGGAATGGGAGAGCATGTTAGAGGAAGCAGATCATAGTAAGCTAATTAGGTTGGAAATGTTCTACAGAAACATGCTTGCTGGTGTGAAAGATAAGCTAATGAAGAGAAGGATCAAGGAGATTATAAAGGAATGTCACCAGTCTTCAGAATTTGCAAAATAG | 1776 | 0.464 | MEDAANFPNSGNLSRKVVAVATGEAHTLALTGDGCVYSWGRGILGRLGRGSEEDELFPVQVKFENPNSSGDTIKIVGIAAGAYHSLALAVGYKKITTVYFYCSVCLFVLFNYIIDYCMDGQLGVNEEESHDSKGDKSLVPCLLNKFLELHPPDSSTDTPEEESKASLKICFVKAGGMMSLAIDNLGALWMWGNCPQKSKEGGFSPVSSFIPTPVRDFHGHTVAKIACGNEHVVALLTSGESYVGEDLVCYSWGNNSYGQLGLGDRESRPQPEFVKSFDQESPWAIYEVACGAFHTALLTHKKSPSDTSASMCWTFGLGDNGQLGHGTTQSELLPTPVKELPQHVHLISVDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDATFTGTDSGDALSPLLISCAPHQPRFPEPIQVACGAAHTVIVAQEGYKIWSWGRGRSGVLGNGKAVDFYTPTLVLWPQLIEDFKQEELKSTGEKDKTTEKETEMDEKLASALNELKQLQTRFSVMERYAGILHGSIFGKPVDERDIPVSLSNSGVFNIAKEWESMLEEADHSKLIRLEMFYRNMLAGVKDKLMKRRIKEIIKECHQSSEFAK | 591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g0514 | 591 | SUPERFAMILY | RCC1/BLIP-II | 163 | 456 | IPR009091 | - | |
| Lele01g0514 | 591 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 247 | 301 | IPR000408 | - | |
| Lele01g0514 | 591 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 16 | 145 | - | - | |
| Lele01g0514 | 591 | Coils | Coil | 480 | 500 | - | - | |
| Lele01g0514 | 591 | Gene3D | - | 112 | 488 | IPR009091 | - | |
| Lele01g0514 | 591 | Gene3D | - | 6 | 99 | IPR009091 | - | |
| Lele01g0514 | 591 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 310 | 362 | IPR000408 | - | |
| Lele01g0514 | 591 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 34 | 91 | IPR000408 | - | |
| Lele01g0514 | 591 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 186 | 238 | IPR000408 | - | |
| Lele01g0514 | 591 | SUPERFAMILY | RCC1/BLIP-II | 11 | 125 | IPR009091 | - | |
| Lele01g0514 | 591 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 288 | 298 | IPR000408 | - | |
| Lele01g0514 | 591 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 33 | 88 | IPR000408 | - | |
| Lele01g0514 | 591 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 313 | 358 | IPR000408 | - | |
| Lele01g0514 | 591 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 250 | 298 | IPR000408 | - | |
| Lele01g0514 | 591 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 362 | 420 | IPR000408 | - | |
| Lele01g0514 | 591 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 363 | 424 | IPR000408 | - | |
| Lele01g0514 | 591 | PRINTS | Chromosome condensation regulator RCC1 signature | 225 | 241 | IPR000408 | - | |
| Lele01g0514 | 591 | PRINTS | Chromosome condensation regulator RCC1 signature | 35 | 51 | IPR000408 | - | |
| Lele01g0514 | 591 | PRINTS | Chromosome condensation regulator RCC1 signature | 75 | 88 | IPR000408 | - | |
| Lele01g0514 | 591 | PRINTS | Chromosome condensation regulator RCC1 signature | 352 | 370 | IPR000408 | - | |
| Lele01g0514 | 591 | PRINTS | Chromosome condensation regulator RCC1 signature | 421 | 442 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g0514 | Lele-ChrLele01 | 3050152 | 3052939 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g0514 | 01 | 3050152 | 3052939 | Lele01g0514 | 01 | 3050152 | 3052939 | ECH | |
| Lele01g0514 | 01 | 3050152 | 3052939 | Lele03g0522 | 03 | 3080128 | 3081339 | hybridization | |
| Lele01g0514 | 01 | 3050152 | 3052939 | Lele04g0520 | 04 | 3141434 | 3144227 | hybridization |