Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0488 ATGGCGTCGTTCCGACGGACTTTGTCGCCGGCGCACCCCGATTGGCAGTACCAAAACGGTGTTGGCTCGCTTTCAGTTTCCTCTCCTCATCACAAGGTTTCTCCTAGTGCTAAGTATGCTTCGCCATTACCAGTGTTGTTTGTGTACGTAGACAGTTTGCGGAGGTTTCTTGCTGGGTTTGTTTTGCGGCGGTGTGCTCGGAAAGGGCAATGGAGAAGAGCATTGTTTAGCTGTTTGATCTTTTTCTTCTTAGGTTTCTTGTGGGGTATGTTTCCTATCGGTCACGTTGTCGATGACATTCGCCGTCAGGATGTCTCATTTGAGATCAAGCCGCCTCGCGGAAATGCAGAATTAGTCCCTGACGAGGCTCTTGTGATTAATCCAGGGGGTTTGAGTGTCGATGAGCATAGTGCTACCGATGATATGCTCGATTTTGTGCCGAGGAAGCAATTGATTGTGGTGACTCCCACATATAATCGGGCGTTTCAGGCCTATGTTTTAAACAGGCTGGGTCACGTGCTCAGGCTCGTACCTCCGCCAGTTCTGTGGATTGTAGTGGAAATGAATTCAGCTTCTATGGAAACTGCTGAAATACTGAGGAAAACTGGTGTGATGTATAGGCATTTGGTTTGCACTAAGAACTCCACAAGTGTGAAGGACAGAGGAGTTCATCAAAGGAATACAGCGTTGGAGCACATTGAGCGCCATAGACTAGATGGGATTGTCTACTTCGCGGATGACGATAATATATATTCTCTCGAGTTGTTTGAGACCTTGAGAGACATAAGACGCTTTGGTACTTGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCCATCTTGGAGGGTCCAGTATGCAATGCAAGTCAAGTGATTGGGTGGCATACAAATGAGAAAAGTAAAAGAGTTCGTAGATTTCATGTTGATATGTCAGGATTTGCTTTTAACAGCACAATCTTGTGGGATTCTAAAAGATGGAAGCGCCGCCCTACATCAAATCCTATTCGCCAATTAGACACAGTGAAGGAGGGTTTCCAAGAGACCACTGTGAGCATTAGTTGA 1065 0.4638 MASFRRTLSPAHPDWQYQNGVGSLSVSSPHHKVSPSAKYASPLPVLFVYVDSLRRFLAGFVLRRCARKGQWRRALFSCLIFFFLGFLWGMFPIGHVVDDIRRQDVSFEIKPPRGNAELVPDEALVINPGGLSVDEHSATDDMLDFVPRKQLIVVTPTYNRAFQAYVLNRLGHVLRLVPPPVLWIVVEMNSASMETAEILRKTGVMYRHLVCTKNSTSVKDRGVHQRNTALEHIERHRLDGIVYFADDDNIYSLELFETLRDIRRFGTWPVAMLAQSKNKAILEGPVCNASQVIGWHTNEKSKRVRRFHVDMSGFAFNSTILWDSKRWKRRPTSNPIRQLDTVKEGFQETTVSIS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0488 354 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 149 353 IPR029044 -
Lele04g0488 354 CDD GlcAT-I 151 349 IPR005027 GO:0015018|GO:0016020
Lele04g0488 354 Pfam Glycosyltransferase family 43 170 351 IPR005027 GO:0015018|GO:0016020
Lele04g0488 354 SUPERFAMILY Nucleotide-diphospho-sugar transferases 150 330 IPR029044 -
Lele04g0488 354 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 70 340 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0488 Lele-ChrLele04 2940589 2943227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0488 1 350 Glycosyltransferase AT1G27600 61.905 1.06e-144 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0488 04 2940589 2943227 Lele04g0488 04 2940589 2943227 ECH
Lele01g0483 01 2855623 2858580 Lele04g0488 04 2940589 2943227 hybridization
Lele02g0467 02 2817180 2819534 Lele04g0488 04 2940589 2943227 hybridization