Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0483 ATGGCGTCGTTCCGACGGACTTTGTCGCCGGCGCACCCCGATCGGCAGTACCAAAACGGTGTTGGCTCGTTTTCAGTTTCCTCTCCTCATCACAAATTTGCTCCTAGTGCTAAGTATGCTTCGCCATTACCACTGTTGTTTGCGTACGTAGCCAGTTTGCGGAGGTTTCTTGCTGGGTTTGTTGTGCGGCGGCATGCTCGGAAAGGACAATGGAGAAGAGCATTGTTTAGCTGTTTGATATTTTTCTTCTTAGGTTTCTTGTGGGGTATGTTTCCTATTGGTCACGTTGTCGATGACATTCGCCGTCAGGATGTCTCATTTGAGATCAAGCCGCCTCGCGCAAATGCAGAATTGGTCCCTGAGGATCGTCCTTTGAAGCGTGACGAGACTTTTGTGATTAATCCAGTGCGTTTGAGTTTCGATAAGCATAGTGATACCGATGATACGCTCGATTTTGTGCCGAGGAAACAATTGATTGTGGTGACTCCCACACATAATCGGGCGTTTCAAGCCTATTTTTTAAACAGGTTGGGTCACTTGCTCAGGCTCGTGCCTCCTCCAGTTCTGTGGATTGTAGTGGAAATGAATTCAGCTTCTATGGAAACTGCTGAAATACTGAGGAAAACTGGTGTGATGTATAGGCATTTGGTCTGCACTAAGAACTCCACAAATGTGAAGGACAGGGGAGTTCATCAAAGGAATACGGCGTTGGAGCACATTGAGCGCCATAGGCTAGATGGGATTGTCTACTTCGCAGATGACGATAATATATATTCTCTTGAGTTATTTGAGACCTTGAGAGACATGAGACGCTTCGGCACTTGGCCTGTTGCCATGCTTACACAAAGCAAAAACAAGGCCATCTTGGAGGGTCCAGTATGCAATGCAAGTCAAGTGATTGGGTGGCATACAAATGAGAGAAGTAAAAGAGTTCGTAGATTTCATGTTGATATGTCAGGATTTGCTTTTAACAGCACAATCTTGTGGGATTCTAAAAGATGGAAGCGCCCTACATCAAATCCTATTCGCCAATTAGACACAGTGAAGGAGGTTTTTCAAGAGACCACCTTTATAGAACAACTGGTGGAAGACGAGAGTCAAATGGAAGGTTCACCTACTGGTTGCTCCAAAATAATGAATTGGCATCTCCATATGGATGCTCACAATACAGATTATCCCAAGAGTTGGCTCCTACATAAAAACCTAGACGCTGTCATCCCAGTCAATTTACCTGTAATCCATGTCGGTGCATCTCTGGATATGTACTACAATTTTAGACCAGTGGCGCTGCCGCGTTTTGTTCTCTGACTGGGGAAAAAGGGTTCCCTGGAGCAAGGAAGGGGGAGTATTGATCAAGTTGCATCTGGATCCATTCATTGTGTGGGATGGAGCTACTGGTGGCAAATTCGATGTTTTGACAAAACTGTTTCTAACTTACGGCTTGTATCAAAATTCACGAGGGTTGCTTCTCAAATATAG 1479 0.451 MASFRRTLSPAHPDRQYQNGVGSFSVSSPHHKFAPSAKYASPLPLLFAYVASLRRFLAGFVVRRHARKGQWRRALFSCLIFFFLGFLWGMFPIGHVVDDIRRQDVSFEIKPPRANAELVPEDRPLKRDETFVINPVRLSFDKHSDTDDTLDFVPRKQLIVVTPTHNRAFQAYFLNRLGHLLRLVPPPVLWIVVEMNSASMETAEILRKTGVMYRHLVCTKNSTNVKDRGVHQRNTALEHIERHRLDGIVYFADDDNIYSLELFETLRDMRRFGTWPVAMLTQSKNKAILEGPVCNASQVIGWHTNERSKRVRRFHVDMSGFAFNSTILWDSKRWKRPTSNPIRQLDTVKEVFQETTFIEQLVEDESQMEGSPTGCSKIMNWHLHMDAHNTDYPKSWLLHKNLDAVIPVNLPVIHVGASLDMYYNFRPVALPRFVLXLGKKGSLEQGRGSIDQVASGSIHCVGWSYWWQIRCFDKTVSNLRLVSKFTRVASQI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0483 492 CDD GlcAT-I 158 387 IPR005027 GO:0015018|GO:0016020
Lele01g0483 492 Pfam Glycosyltransferase family 43 177 385 IPR005027 GO:0015018|GO:0016020
Lele01g0483 492 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 70 405 IPR005027 GO:0015018|GO:0016020
Lele01g0483 492 SUPERFAMILY Nucleotide-diphospho-sugar transferases 157 402 IPR029044 -
Lele01g0483 492 MobiDBLite consensus disorder prediction 1 23 - -
Lele01g0483 492 FunFam Glycosyltransferases 157 399 - -
Lele01g0483 492 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 157 404 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0483 Lele-ChrLele01 2855623 2858580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0483 1 406 Glycosyltransferase AT1G27600 60.391 6.64e-170 483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0483 01 2855623 2858580 Lele01g0483 01 2855623 2858580 ECH
Lele01g0483 01 2855623 2858580 Lele03g0491 03 2868847 2871856 hybridization
Lele01g0483 01 2855623 2858580 Lele04g0488 04 2940589 2943227 hybridization