Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0379 ATGTTTTTTATGCTGAGGAATTTGTTATGGGCAACGTCGAAGCATGATGTATACCTTACGCAAAACTACTCTGTGATGCATTGGTCGTCTTTACTTCGGAGGAGTAAAGAAGTACTTAATGTGGTTAAACCCATTGTTCCAACTGTTAAGCGCGCTGGTTTTTTCGCTCAACCTATCTCCAGAGTACAAATAAGCACCATGGCTGTTAAGGAAAATCTAATGGTAGCAGGCGGTTTCCAGGGTGAGCTCATTTGCAAGAATCTGAATCAATCTGGAGTTGCTTTCTGTAGTAAAATAGCTACCGATGATAATGCTATAACCAATTCTGTGGATGCTTACCGTAATTCCAGTGGGTCTTTGAGGGTCCTGGCTGCAAATAATGACGCCCAAGTTCGGGCTTTCGATGCCGATAATTTTGCTTCTCTCGGTTGCTTCAAATATGACTGGTCTGTTAACAGTATTTCCGTTAGTCCCGATGGAAAGTTGTTAGCCGTTCTCGGGGATAGTACTGTGGGTTTGATAGCTGATGCCAACACCGGAAAGGTTACTGGTAGCCTGAAAGGACACTTGGACTATTCTTTTGCGTCCGCGTGGCACCCAGATGGGCGAATATTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACGCTCCATTGCTGTACTCAAGGGAAGGATGGGAGCAGTAAGAGCAGTGAGGTTCACTTCAGATGGACGGTTTCTGGCTATGGCTGAGCCAGCAGATTTCGTCCATATTTTTGACTTTCACAGTGATTACGAACAAGGACAAGAAATCGATTTATTTGGTGAGATCGCTGGCATTTCCTTTAGTCCGGACGCGGAGGCTTTGTTTGTTGGTATCGCTGATCGCACATACGGAAGCTTGTTAGAGTTCAACAGGAAACGTTGTAATCGATATCTAGACTCCTTGTTTTAG 957 0.4451 MFFMLRNLLWATSKHDVYLTQNYSVMHWSSLLRRSKEVLNVVKPIVPTVKRAGFFAQPISRVQISTMAVKENLMVAGGFQGELICKNLNQSGVAFCSKIATDDNAITNSVDAYRNSSGSLRVLAANNDAQVRAFDADNFASLGCFKYDWSVNSISVSPDGKLLAVLGDSTVGLIADANTGKVTGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSRSIAVLKGRMGAVRAVRFTSDGRFLAMAEPADFVHIFDFHSDYEQGQEIDLFGEIAGISFSPDAEALFVGIADRTYGSLLEFNRKRCNRYLDSLF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0379 318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Lele04g0379 318 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 315 - -
Lele04g0379 318 ProSitePatterns Trp-Asp (WD) repeats signature. 205 219 IPR019775 -
Lele04g0379 318 SMART WD40_4 179 218 IPR001680 GO:0005515
Lele04g0379 318 SMART WD40_4 138 175 IPR001680 GO:0005515
Lele04g0379 318 SMART WD40_4 222 261 IPR001680 GO:0005515
Lele04g0379 318 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Lele04g0379 318 SUPERFAMILY WD40 repeat-like 58 298 IPR036322 GO:0005515
Lele04g0379 318 Pfam WD domain, G-beta repeat 181 218 IPR001680 GO:0005515
Lele04g0379 318 FunFam WD-40 repeat family protein 99 315 - -
Lele04g0379 318 Gene3D - 78 313 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0379 Lele-ChrLele04 2253380 2255651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0379 104 298 Miscellaneous Gene Families AT5G08390 26.667 9.25e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0379 04 2253380 2255651 Lele04g0379 04 2253380 2255651 ECH
Lele01g0375 01 2182956 2187643 Lele04g0379 04 2253380 2255651 hybridization
Lele02g0371 02 2156869 2159119 Lele04g0379 04 2253380 2255651 hybridization