Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0375 ATGGAGCTTTTAAATAACGACGATCTCAACTACGTTGACGACGACTTTTTTGACGTCCCCGATTTTGAGGACGATGACCCTTTCGCCGACAGTCGCTCTCACAGCAACACTGCCTTTCATTCTCCGGACTCCGACTATGAAGAAGATTTTGAAATGAGTCAATCGAAGACTGATACTTCTGCTCTGCAAGCTAGGAATGGGAAAGATATCCAGGGAATTCCTTGGGAGAGGCTTAATTATACCAGGGACAAATACCGTGAGACTCGACTAAAGCATTACAAGAACTATGAGAATCTCTCTCGCTCTCGGGTGGATCTTGACAAGGAGTGCCTCGAAGTGAGGAAAGGAAATTCCTTTTATGACTTCCAGCTCAATACAAGGATTGTCAAATCAACAATTGTGCATTTTCAGGTGGAAAGTGAGCGGCTTGGCAGGACATTTTCTTATGGTATGACAGGAAAATATCTGACCACATTTAAGAGGGCTCTGAGGAATTTGTTATGGGCAACGTCGAAGCATGATGTATACCTTATGCAAAACTACTCTGTGATGCATTGGTCGTCTTTACTTCGAAGGAGTAAAGAAGTACTTAATGTGGTGAAACCCATTGTTCCAACTGTTAAGCGCCCTGGATTTTTGGCTCAACCTATCTCAAGAGTACAAATAAGCACCATGGCTGTTAAGGAAAATCTAATGGTAGCAGGTGGTTTCCAGGGTGAGCTTATTTGCAAGAATCTGAATCGATTTGGAGTTGCTTTCTGTGGTAAAATAACTGCCGATGATAATGCTATAACCAATGCTGTGGATGCTTACCGTAATCCCAGCGGGTGTTTGAGGGTCATGGCAGCAAATAACGACGCCCAAGTTCGGGTTTTCGATGCTGATAATTTTGCTTCTCTCGGTTGCTTCAGATATGACTGGTCTGTTAACAATATTTCCGTTAGTCCCGATGGAAAGTTGTTAGCTGTTCTTGGGGATAGTGCTGAGGGTTTGATAGCTGATGCTAACACCGGAAAGGTTACTGGTAGCCTGACAGGACACTTGGACTATTCTTTTGCGTCTGCGTGGCACCCAGATGGGCTAATGTTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGATATTAGAAATCTTTCACGCTCCATTGCTGTGCTCAAGGGAAGAATGGGAGCAGTAAGAGCCTTGAGGTTCACTTCAGATGGACGGTTTCTGGCTATGGCAGAGCCTGCAGATTTCGTGCATATTTTTGACTCTCACAGTGATTATAAACAAGGACAAGAAATCGATTTATTTGGGGAGATCGCTGGTATTTCCTTTAGCCCTGACACGGAGGCTCTATTTGTTGGTATCGCCGATCGCACATATGGAAGCTTGTTAGAGTTCAACAGGAAACGTTGTAATCAATATCTAGACTCCATGTTTTAG 1431 0.4403 MELLNNDDLNYVDDDFFDVPDFEDDDPFADSRSHSNTAFHSPDSDYEEDFEMSQSKTDTSALQARNGKDIQGIPWERLNYTRDKYRETRLKHYKNYENLSRSRVDLDKECLEVRKGNSFYDFQLNTRIVKSTIVHFQVESERLGRTFSYGMTGKYLTTFKRALRNLLWATSKHDVYLMQNYSVMHWSSLLRRSKEVLNVVKPIVPTVKRPGFLAQPISRVQISTMAVKENLMVAGGFQGELICKNLNRFGVAFCGKITADDNAITNAVDAYRNPSGCLRVMAANNDAQVRVFDADNFASLGCFRYDWSVNNISVSPDGKLLAVLGDSAEGLIADANTGKVTGSLTGHLDYSFASAWHPDGLMLATGNQDTTCRLWDIRNLSRSIAVLKGRMGAVRALRFTSDGRFLAMAEPADFVHIFDSHSDYKQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRCNQYLDSMF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0375 476 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 473 - -
Lele01g0375 476 FunFam WD-40 repeat family protein 257 473 - -
Lele01g0375 476 Gene3D - 258 472 IPR015943 GO:0005515
Lele01g0375 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 379 - -
Lele01g0375 476 Pfam WD domain, G-beta repeat 339 376 IPR001680 GO:0005515
Lele01g0375 476 MobiDBLite consensus disorder prediction 27 64 - -
Lele01g0375 476 SMART WD40_4 337 376 IPR001680 GO:0005515
Lele01g0375 476 SMART WD40_4 380 419 IPR001680 GO:0005515
Lele01g0375 476 SMART WD40_4 296 334 IPR001680 GO:0005515
Lele01g0375 476 SUPERFAMILY WD40 repeat-like 215 463 IPR036322 GO:0005515
Lele01g0375 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Lele01g0375 476 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0375 Lele-ChrLele01 2182956 2187643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0375 322 456 Miscellaneous Gene Families AT5G08390 32.000 3.28e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0375 01 2182956 2187643 Lele01g0375 01 2182956 2187643 ECH
Lele01g0375 01 2182956 2187643 Lele03g0381 03 2203850 2208559 hybridization
Lele01g0375 01 2182956 2187643 Lele04g0379 04 2253380 2255651 hybridization