Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0369 ATGGCGCAGGAATGCTACCATACTCTCCGCCATTTCCTCCGTCGTGTACGCTGGTCCTCTCAATCCCCTTCATTACGACCAGCCATACCTCTACGGTTGAACTCTTCTTTTTGTACTAACTGCCTTCTTACTTCTAAATCCACAAGTCCCATCTCCAAAGTTTTGAAGCCCCTTGCCACTTCGAAAGAGAATTACACGTTCTTTCTGAAGAAAGATGAGCGCTTAGCGGAGCCTGTTGGTGCTGCTCATGATCTCAGCGGTGTTCAGAACACGAGCACAATTGCTGCCATTGTCACATCCTTGGGGGGTCCCCCTGGTGCTGTGGGAATCGTTCGACTTTCGGGGCCTTCTGCTGTGGCTATCGCTAGTCGAGTATTTCGGCCTACGAGGAAAAGGAAGAAGATGACGTGGCAACCCATTAGCCATGTTGTGGAGCATGGTATGGTGCTCGATACAGATGGGAATGTAATTGATGAGGTTTTAGTAGTACCCATGTTTGCCCCGAGGTCTTACACTCGTGAAGACGTGATTGAGCTTCAATGTCATGGGAGTGAAGTGTGTCTACGCCGTGTATTGAGAACTTGTCTGGAAGCTGGAGCAAGACTTGCTGAACCAGGTGAATTTACTCTGCGTGCTTTTCTAAATGGTCGGTTAGATCTATCCCAAGCTGAAAATGTTGAAAGACTAATATCTGCCAAATCTGTTGCTTCTGCTGATGCAGCTCTGGCAGGAATCCAGGGCGGTTTCTCTTCTCTTGTCAGGTCACTGAGACTACAGTGCATTGAGTTGCTTACTGAAATTGAAGCACGTTTAGATTTTGATGATGAGATGCCACCTCTAGATTTAAATTTATTAATGGATAAAATACATACAATGTCGCAAGATGTACGGGATGCACTAGAGACAGCCAATTATGACAAGCTTCTTCAATCTGGATTACAGATAGCAATTGTTGGTCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCTATAGTTACTGAAATTGCTGGAACCACCCGGGATGTGCTTGAAGCAAGTGTCACCATCAATGGTATTCCTATAACCTTGCTTGATACTGCAGGAATCAGGGATACTGATGACATTGTTGAAAAGATTGGCGTAGAGAGATCTGAAGCAGTTGCTATGGGAGCTGACTTGATTATCATGACTGTCAGTGCTGTTGAAGGGTGGACTTTGGAAGACACCAAACTTCTAGAAAGGATTCAATCTACTAAGAGATCAATGGGATCTTCCACCCCTGCAATTCTTGTGGTCAACAAGATAGATTGTGCTCCTGGTGCTGAGAGGGGATGGGCCGAAGTATGCTCCAATTTTTTCAGTAAACATGTGTTTACATGTGCTGTCACTGGTGAAGGATTACAGGAGTTAGAGAGGGTTGTGTTAGAGATAGTGGGCCTGAACAACATTCCCACCGGGGGACGTAAATGGACGGTTAATCAGAGACAATGTGAACAACTTGTTCGGACGAAGGAAGCTTTAGAAAGACTAAAAGCCTCGATAGAGGAGAAACTACCTCTGGATTTTTGGACAATTGATTTAAGGGATGCAGCATTGGCGCTTGGCCAGATCAGTGGAGAAGATATATCGGAAGAGGTTTTATCTAATATATTTGGCAAGTTCTGTATTGGTAAATAG 1680 0.45 MAQECYHTLRHFLRRVRWSSQSPSLRPAIPLRLNSSFCTNCLLTSKSTSPISKVLKPLATSKENYTFFLKKDERLAEPVGAAHDLSGVQNTSTIAAIVTSLGGPPGAVGIVRLSGPSAVAIASRVFRPTRKRKKMTWQPISHVVEHGMVLDTDGNVIDEVLVVPMFAPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAEPGEFTLRAFLNGRLDLSQAENVERLISAKSVASADAALAGIQGGFSSLVRSLRLQCIELLTEIEARLDFDDEMPPLDLNLLMDKIHTMSQDVRDALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVLEASVTINGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVSAVEGWTLEDTKLLERIQSTKRSMGSSTPAILVVNKIDCAPGAERGWAEVCSNFFSKHVFTCAVTGEGLQELERVVLEIVGLNNIPTGGRKWTVNQRQCEQLVRTKEALERLKASIEEKLPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0369 559 Gene3D tRNA modification GTPase MnmE domain 2 218 559 IPR027368 -
Lele04g0369 559 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 312 480 IPR031168 -
Lele04g0369 559 Pfam GTP-binding protein TrmE N-terminus 93 217 IPR018948 -
Lele04g0369 559 Pfam 50S ribosome-binding GTPase 314 435 IPR006073 GO:0005525
Lele04g0369 559 Gene3D - 313 487 IPR027417 -
Lele04g0369 559 FunFam tRNA modification GTPase MnmE 313 487 - -
Lele04g0369 559 Pfam MnmE helical domain 220 556 IPR025867 -
Lele04g0369 559 Gene3D Probable tRNA modification gtpase trme; domain 1 80 217 IPR027266 GO:0005515
Lele04g0369 559 Hamap tRNA modification GTPase MnmE [mnmE]. 92 559 IPR004520 GO:0003924|GO:0005525|GO:0006400
Lele04g0369 559 CDD trmE 310 480 IPR031168 -
Lele04g0369 559 TIGRFAM small_GTP: small GTP-binding protein domain 313 438 IPR005225 GO:0005525
Lele04g0369 559 Coils Coil 494 518 - -
Lele04g0369 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 475 IPR027417 -
Lele04g0369 559 PANTHER TRNA MODIFICATION GTPASE GTPBP3 66 559 - -
Lele04g0369 559 FunFam tRNA modification GTPase MnmE 88 217 - -
Lele04g0369 559 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 106 559 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0369 Lele-ChrLele04 2178255 2182153 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0369 04 2178255 2182153 Lele04g0369 04 2178255 2182153 ECH
Lele01g0367 01 2123311 2127374 Lele04g0369 04 2178255 2182153 hybridization
Lele02g0361 02 2090006 2097717 Lele04g0369 04 2178255 2182153 hybridization