Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0367 ATGGCGCTGGAATACTTCCCAGCTCTCCGAAATTTCCTTCGTCGTGCATGCTGGTTCTCTCAATCCTCTCCATCACGCCCAGCCATACCTCTACTGATGAAACCTTCTTTTTGTACTAACTGCCTTCTTTCTTCTAAATCCACAACTCCAAGTCCCGTCCCCAAAGTTTTGAAGCCCCATGCCACTTCTAAAGAGAATTACAGGTTCTTTCTGAAGAAAGATGAGCGCTTAGAGGAGCCTGTTGGTGCTGGTCATGATCTCAGTGGTGTCCAGAACACGAGCACAATTGCTGCCATTGTGACATCCTTGGGGGGTCCCCCTGGTGCTGTGGGGATCGTTCGACTTTCGGGGCCTTCTGCTGTGGCTATCGCTAGTCGAGTATTTCGACCTACCAGGAAAAGGAAGAAGAGGACGTGGCAACCCATTAGCCATGTTGTGGAGCATGGTATGGTGCTCGATACAGATGGGAATGTAATTGATGAGGTTTTAGCAGTACCCATGTTAACCCCGAGGTCTTACACTCGCGAAGACGTGATTGAGCTTCAATGTCATGGGAGTGACGTGTGTCTACGCCGTGTATTGAGAACTTGTCTGGAAGCTGGAGCAAGACTTGCTGAACCAGGTGAATTTACTCTGCGTGCTTTCCTTAATGGTCGGTTAGATCTATCCCAAGCTGAAAATGTTGAAAGACTAATATCAGCCAAATCTGTTGCTGCTGCTGATGCAGCACTGGCAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGCTCACTGAGAAAACAGTGCATTGAACTTCTTACTGAGATTGAAGCTCGTTTAGATTTTGATGATGAAATGCCACCTCTAGATTTAAATTTATTAATGGATAACATACATACGATGACGCATGATGTACGAGATGCACTGGAGACAGCCAATTATGACAAGCTTCTTCAATCTGGATTACAGATAGCAATTGTTGGTCGTCCAAATGTCGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCCATAGTTACTGAAATTGCTGGAACCACCCGGGATGTGATTGAAGCAAGTGTCACCGTCAATGGTATTCCTATAACCTTGCTTGATACTGCAGGAATCAGGGATACTGACGACATTGTAGAAAAGATTGGCGTAGAGAGATCTGAAGCAGTTGCTATGGGAGCTGACTTGATTATCATGACTGTCAGTGCTGTTGAAGGGTGGACTTTGGAAGACACCAAACTTCTAGAAAGGATTCGATCTACTAAGAGATCAATGGGATCTTCTACCCCTGCAATTCTTGTGATCAACAAGATAGATTGTGCTCCTGGTGCTGAAAGTGGGTGGGCCAAAGTATGTTCCAATCTTTTCAGTAAACATGTGTTTACATGTGCTGTCACTGGCAAAGGATTACAGGAGTTAGAGAGGGTGGTGTTAGAGATAGTGGGTCTGAACAACATTCCCACTGGGGGACGTAAATGGACGGTTAATCAGAGACAATGTGAACAACTTGTTCGGACGAAGGAAGCTTTAGAAAGACTAAAAGCCTCTATAGAGGAGAAACTGCCTCTGGATTTTTGGACAATTGATTTAAGAGATGCAGTGTTGGCGCTTGGGCAGATCAGTGGAGAAGATATATCGGAAGAGGTTTTATCTAACATATTTGGCAAGTTCTGTATTGGTAAATAG 1686 0.4508 MALEYFPALRNFLRRACWFSQSSPSRPAIPLLMKPSFCTNCLLSSKSTTPSPVPKVLKPHATSKENYRFFLKKDERLEEPVGAGHDLSGVQNTSTIAAIVTSLGGPPGAVGIVRLSGPSAVAIASRVFRPTRKRKKRTWQPISHVVEHGMVLDTDGNVIDEVLAVPMLTPRSYTREDVIELQCHGSDVCLRRVLRTCLEAGARLAEPGEFTLRAFLNGRLDLSQAENVERLISAKSVAAADAALAGIQGGFSSLVSSLRKQCIELLTEIEARLDFDDEMPPLDLNLLMDNIHTMTHDVRDALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVSAVEGWTLEDTKLLERIRSTKRSMGSSTPAILVINKIDCAPGAESGWAKVCSNLFSKHVFTCAVTGKGLQELERVVLEIVGLNNIPTGGRKWTVNQRQCEQLVRTKEALERLKASIEEKLPLDFWTIDLRDAVLALGQISGEDISEEVLSNIFGKFCIGK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0367 561 Gene3D tRNA modification GTPase MnmE domain 2 220 561 IPR027368 -
Lele01g0367 561 Gene3D Probable tRNA modification gtpase trme; domain 1 83 219 IPR027266 GO:0005515
Lele01g0367 561 CDD trmE 312 482 IPR031168 -
Lele01g0367 561 Coils Coil 496 520 - -
Lele01g0367 561 FunFam tRNA modification GTPase MnmE 315 489 - -
Lele01g0367 561 Pfam 50S ribosome-binding GTPase 316 437 IPR006073 GO:0005525
Lele01g0367 561 FunFam tRNA modification GTPase MnmE 90 219 - -
Lele01g0367 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 477 IPR027417 -
Lele01g0367 561 Gene3D - 315 489 IPR027417 -
Lele01g0367 561 Hamap tRNA modification GTPase MnmE [mnmE]. 94 561 IPR004520 GO:0003924|GO:0005525|GO:0006400
Lele01g0367 561 TIGRFAM small_GTP: small GTP-binding protein domain 315 440 IPR005225 GO:0005525
Lele01g0367 561 Pfam GTP-binding protein TrmE N-terminus 95 219 IPR018948 -
Lele01g0367 561 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 314 482 IPR031168 -
Lele01g0367 561 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 108 561 IPR004520 GO:0003924|GO:0005525|GO:0006400
Lele01g0367 561 Pfam MnmE helical domain 222 558 IPR025867 -
Lele01g0367 561 PANTHER TRNA MODIFICATION GTPASE GTPBP3 66 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0367 Lele-ChrLele01 2123311 2127374 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0367 01 2123311 2127374 Lele01g0367 01 2123311 2127374 ECH
Lele01g0367 01 2123311 2127374 Lele03g0372 03 2133894 2134688 hybridization
Lele01g0367 01 2123311 2127374 Lele04g0369 04 2178255 2182153 hybridization