Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0356 ATGGATATGTCGGGTGCTCAGTCGGGACTATCTCTTGGCTTAAACGCTCAGATTTCGTCACCGACTTTGGCAGGCCATTTGCTTGAGGAAAAATACGACAAGGTTAGGGTCAAATCCAGTGAAGAAACAGAGGAGGAAGAAGAAGAGGAAGGAACAGTGGAAGATGAAGCTATCGACTTTATGGGTCGGCCTGTGTGTGCGAACAGGAAATTAGAGGGGCAGCCGAATTTCCCTTCGAATCCTCCGAAGCGGCTTGGTGCCGAGTCGGGGCTTGACGCTACTCGAGCTTCAGTGCAGGCTTTGGCGAATCAGCCAATGGAGGTAGCTGACCCCGAGATTCATGAAATAATGGAGAAGGAAAAGCGGAGACAGTTCACAGGAATAGAATTGATTGATTCTCAGAACTTTGTATGCAGAGCTGTCATGGAGGCTTTGGGAAGTCATTTGACGAACAAGTACTCTGAAGGAATGCCTGGAGCCAAATACTACACAGGGAATGAGTTTATTGATCAGATGCTGAAGATTGCTGATAAGTGTGGGACTGTTTTGATTTGTGACATGGCTCATATTAGCGGGCTTGTGGCAGCTAAGATGGATCCGCTAAACTATTCACATTTATCCAGTGAGAGTCAAATTGCTTATGCTGATCAAGAAGAAGTTGCTAGCCCATTTGATTACTGTGATATTGTTACTTCAACAAACCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGGAAAGGTCCAAAACCTAGGAAGCAAGGCCTTGCTCTTAATCATGGGGATGATGGTGAGGAAAAATGCACAGGCCTTAGCATCTGCTTTGCTGAAAAGAAAATGCAGACTGATAGAAACTATGAGGAGGTCTGTGAGGCTTGTAACATCACCCTCAACAAATGTGCCATTTATGGTTCTATTTCACCTGGAAGAGTGAGAATCGGTACTCCTGCAGTGAAATCAAGAGGTTGCTTGGAGGATGATTTTGAGATCATAGCTAATTTTCTTCTGAAGGCAGCACAGATTACCAGCAATATACAGAAGGAATACGGAAAATCTTGTAAAGATTTCCTCAAAGGGAAGCTCCTTTGGATCACACACAAATGGCACACAGATTATGTTTCCTCGGCTTACATCATTACTTAAACCGAACTGTATAAAAGCTTTCCATTAGCAAAAGAAGCTGCTTCTGACATTAAAGAGGGTCCAGGAATCTCAGAATGCGCCTTGCCTAGCAGCCCTTAG 1251 0.4444 MDMSGAQSGLSLGLNAQISSPTLAGHLLEEKYDKVRVKSSEETEEEEEEEGTVEDEAIDFMGRPVCANRKLEGQPNFPSNPPKRLGAESGLDATRASVQALANQPMEVADPEIHEIMEKEKRRQFTGIELIDSQNFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNEFIDQMLKIADKCGTVLICDMAHISGLVAAKMDPLNYSHLSSESQIAYADQEEVASPFDYCDIVTSTNHKSLRGPRGGIIFYRKGPKPRKQGLALNHGDDGEEKCTGLSICFAEKKMQTDRNYEEVCEACNITLNKCAIYGSISPGRVRIGTPAVKSRGCLEDDFEIIANFLLKAAQITSNIQKEYGKSCKDFLKGKLLWITHKWHTDYVSSAYIITXTELYKSFPLAKEAASDIKEGPGISECALPSSP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0356 416 Gene3D Aspartate Aminotransferase, domain 1 110 134 IPR015422 GO:0003824
Lele04g0356 416 SUPERFAMILY PLP-dependent transferases 171 357 IPR015424 -
Lele04g0356 416 Pfam Serine hydroxymethyltransferase 107 172 IPR039429 -
Lele04g0356 416 Pfam Serine hydroxymethyltransferase 281 337 IPR039429 -
Lele04g0356 416 Pfam Serine hydroxymethyltransferase 218 253 IPR039429 -
Lele04g0356 416 SUPERFAMILY PLP-dependent transferases 96 172 IPR015424 -
Lele04g0356 416 Gene3D Aspartate Aminotransferase, domain 1 279 393 IPR015422 GO:0003824
Lele04g0356 416 MobiDBLite consensus disorder prediction 69 90 - -
Lele04g0356 416 MobiDBLite consensus disorder prediction 1 22 - -
Lele04g0356 416 MobiDBLite consensus disorder prediction 1 25 - -
Lele04g0356 416 MobiDBLite consensus disorder prediction 35 54 - -
Lele04g0356 416 Gene3D - 135 172 IPR015421 GO:0003824
Lele04g0356 416 Gene3D - 173 278 IPR015421 GO:0003824
Lele04g0356 416 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 171 262 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0356 Lele-ChrLele04 2105927 2110497 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0356 04 2105927 2110497 Lele04g0356 04 2105927 2110497 ECH
Lele01g0352 01 2055752 2060533 Lele04g0356 04 2105927 2110497 hybridization
Lele02g0349 02 2004821 2008793 Lele04g0356 04 2105927 2110497 hybridization