Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0352 ATGCAGATACCACAAGTTCATGACATTACACAAGCAAAATACGAGTATGTACCGGGACGACTGGGTGACGTGGCTAGCCATGTGGTTCATGACTTGGCCGATGACTGGAAAACTTGGGTGACGTGGTGGGCTTTGGGGTCGATGACCGGGATGATGGAAATATGCGCTCCCCCTCTCGCTTTCTGTGTATCTCTGCCGCTACCGGCTACCATCCCGCAAAATCATTTCTCCCCTGCCCCCTCATGCCATCCAGGTTCATTCTCTTTTAGCACCCTTCCTCTCTCAGGCCATCGACACGAAAGCCTACTTGTTTACTCTCTTTCTTTTACTTTTCCCATTGTTCTATGGAAACATCTCGTCCGTCGTCTAGCCCACGCCGATCTCCCTTCCGCTACTTCCAGTGTTCCTGTTTCAGACGGTGTTGTCGTTGTTTCTGCTGTTTCTACTCCTATCCCTAAGCTAGTTTTCCTATCAAAAAGCTTTATCTCTCATTTCTTAAGGACGTGTTGCCAGTTAGGAAATATGGATTTGTCGGGTGCTCAGTCTGGCCTATCTCTTGGCTTAAACGCTCAGATTTCGTCACCGGGTTTGGCAGGCCATGTTGATGATAATTTAGCTTCCTTTCGACAGAATTCAAGCTTTCGTAGTTCCTCCAATACAACCCCTTTTGTTCCGTTGCAGTTGCTTGAGGACAAAGACGACAAGGTTAGGGTCAAATCCAGTGAAGAAAGAGAGGAGGATGAAGATGAAGAAGAAGAGGAAGGAGCAGTGGAAGATGAAGCGATCGACTTTATGGGTCGGCCTGTGTGTGCCAAGAGGAAATTAGAGGGACAGCCGAATTTCTCTTCGAATCCTCCGAAGCGGCTTGCTGTCGATTCGGAGCTTGACGCGAGGCGAGCTTCAGCGCAGGCTTTGGCGAATCAGCCAATGGAGGTAGCTGACCCCGAGATTCATGAAATAATGGAGAAGGAAAAGCGTAGACAGTTCACAGGAATTGAATTGATTGCTTCTGAAAACTTTGTATGCAGAGCTGTCATGGAGGCTTTGGGAAGTCATTTGACGAACAAGTACTCTGAGGGAATGCCTGGAGCCAAATACTACACAGGGAATCAGTTTATTGATCAGATGGAATTCCTTTGCTGTAAGCGTGCATTGGCTGCCTTTGATCTCCATCCAAGCAAGTGGGGCGTGAACGTTCAGCCTTACTCATGCACTTCTGCCAACTTTGCCGTGTACACTGGTATATTGCATCCAGGGGATCGAATTATGGGTTTGGATCTGCTATCCGGTGGGCATCTGAGTCATGGATATTATACCCACAGTGGAAAGAAGATTTCTGCTGCATCAATATTCTTTGAAACTCTTGCCTACAAAGTCAATCCTCTAACAGGCTTCTTAGACTATGACAAGCTTGAAGAAAAAGCCTGCGATTATCGCCCCAAACTACTTATATGCGGAGGTAGTTCGTATCCTAGGGAATGGGATTATGCAAGGTTTAGGAAGATTGCTGATAAGTGTGGGGCCGTTTTGATGTGTGACATGGCTCATATTAGCGGGCTTGTGGCAGCTAAGGAAGTTGCTAGCCCATTTGATTATTGTGATATTGTTACTTCAACAACCCACAAGAGTCTACGAGGTCCAAGGGGAGGTATCGTCTTTTATAGGAAAGGCCCAAAACGTAGGAAGCAAGGCCTGGCTCTTAATCATGGGGATGATGGTAATTATGACTTGGAGGAAAAGATAAACTTCGCATTATATCCATCCTTACAAGGAGGCCCGCACAATAATCACATTGCTGCTCTCTCCATAGCCTTAAAACAAGTAGCAACTCCAGAGTACAAAGTATATATGCAACAGGTGAGGAAAAATGCACAGGCGTTAGCATCTGCTTTGCTGAAAAGAAAATGCAGATTGGTAACTGATGGCACTGACAATCACTTGTTGCTCTGGGACCTTACTGCACTCGGCTTACTTGATAGAAACTATGAGAAGGTCTGTGAGGCTTGTAATATCACACTCAACAAATGTGCCATTTATGGTTCTATTTCACCTGGAGGAGTGAGAATAGGTACTCCTGCAATGACATCAAGAGGTTGCTTAGAGGATGATTTTGAGATCATAGCTGATTTTCTCCTGAAGGCAGCACAGGTCACAAGCAATATACAGAAGGAATACGGAAAATCTTGTAAAGATTTTCTCAAAGGTCTTCAAAATAATAAAGATATCGTTGAGCTCAGAAATCAGGTTGAGGCATTTGCTTCCGAGCTTCCAATGCCGGCATTTGATATTTGA 2292 0.4546 MQIPQVHDITQAKYEYVPGRLGDVASHVVHDLADDWKTWVTWWALGSMTGMMEICAPPLAFCVSLPLPATIPQNHFSPAPSCHPGSFSFSTLPLSGHRHESLLVYSLSFTFPIVLWKHLVRRLAHADLPSATSSVPVSDGVVVVSAVSTPIPKLVFLSKSFISHFLRTCCQLGNMDLSGAQSGLSLGLNAQISSPGLAGHVDDNLASFRQNSSFRSSSNTTPFVPLQLLEDKDDKVRVKSSEEREEDEDEEEEEGAVEDEAIDFMGRPVCAKRKLEGQPNFSSNPPKRLAVDSELDARRASAQALANQPMEVADPEIHEIMEKEKRRQFTGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQFIDQMEFLCCKRALAAFDLHPSKWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDLLSGGHLSHGYYTHSGKKISAASIFFETLAYKVNPLTGFLDYDKLEEKACDYRPKLLICGGSSYPREWDYARFRKIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIVFYRKGPKRRKQGLALNHGDDGNYDLEEKINFALYPSLQGGPHNNHIAALSIALKQVATPEYKVYMQQVRKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLLDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFEIIADFLLKAAQVTSNIQKEYGKSCKDFLKGLQNNKDIVELRNQVEAFASELPMPAFDI 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0352 763 Gene3D Aspartate Aminotransferase, domain 1 314 759 IPR015422 GO:0003824
Lele01g0352 763 FunFam Serine hydroxymethyltransferase 339 557 - -
Lele01g0352 763 MobiDBLite consensus disorder prediction 234 257 - -
Lele01g0352 763 Pfam Serine hydroxymethyltransferase 311 710 IPR039429 -
Lele01g0352 763 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 534 550 IPR019798 GO:0030170
Lele01g0352 763 Hamap Serine hydroxymethyltransferase [glyA]. 309 760 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele01g0352 763 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 300 762 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele01g0352 763 Gene3D - 339 618 IPR015421 GO:0003824
Lele01g0352 763 CDD SHMT 314 752 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele01g0352 763 SUPERFAMILY PLP-dependent transferases 300 761 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0352 Lele-ChrLele01 2055752 2060533 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0352 01 2055752 2060533 Lele01g0352 01 2055752 2060533 ECH
Lele01g0352 01 2055752 2060533 Lele03g0360 03 2066740 2070346 hybridization
Lele01g0352 01 2055752 2060533 Lele04g0356 04 2105927 2110497 hybridization