Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0283 ATGGAGTCACCGGAGTGCCCGGTGTGCCTCCAAACATACAACGAAGAGAATACAATTCCTAGGGTTCTTGCCTGTGGCCACTCGGTTTGTGAAGCCTGCCTAGTTGAACTCCCACAGCGATACCCCACCCCCATCCGCTGCCATGCGTGTACCCAACTCGTCAAGTATTCTGCTCAGCAAGGACCCTCTGCCCTTCCCAAGAACATCGAACTCCTCAGACTCTGTCTTAAACACCCATCTTCTTCTTCTTCCGATGTCTCGCAGAATTCGAAGTATCATTGCGCCAAGAATGGTGACGATCACTATGAATTTTATCCTCGGTTCTGGTCGGCCGAGTTGTATGCTGTCAGGAAGGATTGGATTCTCCCACACGACGTCGTTTCAATTGAGTCCGAACCTGCTGGCCGCGAAGGCCTCGCTCTTGGCCGTCTTAGTTTCATTTCATCTTCTTCTTTGTACAGGAGAGTTTGCATAAAAAGAAAACCAGAGCCTGAGCCTTGCTCCGATTGCTTCTTTACCTCCAGTCAATCATTCTAA 537 0.4991 MESPECPVCLQTYNEENTIPRVLACGHSVCEACLVELPQRYPTPIRCHACTQLVKYSAQQGPSALPKNIELLRLCLKHPSSSSSDVSQNSKYHCAKNGDDHYEFYPRFWSAELYAVRKDWILPHDVVSIESEPAGREGLALGRLSFISSSSLYRRVCIKRKPEPEPCSDCFFTSSQSF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0283 178 Pfam RING-type zinc-finger 6 48 IPR027370 -
Lele04g0283 178 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Lele04g0283 178 SUPERFAMILY RING/U-box 3 59 - -
Lele04g0283 178 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Lele04g0283 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lele04g0283 178 PANTHER PROTEIN CBG20824 2 98 - -
Lele04g0283 178 SMART ring_2 6 50 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0283 Lele-ChrLele04 1670559 1671095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0283 2 91 Miscellaneous Gene Families AT1G74370 30.392 9.19e-08 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0283 04 1670559 1671095 Lele04g0283 04 1670559 1671095 ECH
Lele01g0288 01 1633359 1637246 Lele04g0283 04 1670559 1671095 hybridization
Lele02g0275 02 1570532 1571245 Lele04g0283 04 1670559 1671095 hybridization