Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0288 ATGGAGCTACCGGAGTGTCCGGTTTGCCTACAAACCTACAACGAAGAGAGCACAATTCCCAGGGTTCTTGCCTGTGGCCACTCGGTCTGTGATGCCTGCCTTGTTGAACTCCCACAGCGATACCCCACCACCATTCGCTGCCCTGCGTGTACCCAACTCGTCAAGTACTCTGCTCAGCAAGGTCCCTCTGCCCTTCCCAAGAACATCGATCTCCTCAGACTCTGTCTCGAACACTCATCTTCTTCTTCGGATGTCTCGCAGAATTCGAAGCATCATTCCACAAAGAATGGCGATGATCACTATGAATTTTGTCCTCGGTTCTGGTCGGACGAGTTATATGCTGTCTGGAAGGATTGGATTCTCCCGCACGACGTCGTTTCAATTGAGTCCGAACCCCCTTGCCGTGAAAGCGCTCTTGGCCGTCTCCTACGAGGGCGATTCATTTCATCTTCTTCTTTGAATGGGAGAGTTTGCATAAAAGAAAACCAGGGCCTGAGCCTTGCTCCGATTGCTTATTTACCTCCAGTCAATCATTTTAAGTTAAAAGTTAGTTATGAGGCCCGAATTATGATTTGTTTACAGGGGATGAAAGAGGTTCAGAGACAAGAGTTAGCATTGCTTCTCAAAGCGTCCATTAAACAGAATAGGATATGTGATGCTTATGGCTTGTGGGGCGACTTAGTAGATGGTCAACTGTATTTAGTGTGCGAGAGACACAATGGTAGTCTTGCCGAGAAGTCTAGTGAGTTGAGATGTGGGTTTGTCGGTCTCGCTGGAGATGCTTTGAATAGAGATGGATTTGTTAGTTTTTCAATGAGAGGTTTGAGTATTTGTGAAGCCTTGATTGCTCTGCACACTGAAGGTTTGGTTGCCGGCTATTTTGGACTTTTTTGCTTCTGTTTTGATGAGTTCGGGAGCATTTATTTTAATTTGAATGAGGCATTAGCGAAGGGAAGGAAGGTTCGTTTGGATCTAATGGATGCTATCTCTAGTTGCACTAGTAAGATAGATAAGCAAGAAGCAATTTGTGAGTATGTCTTTAAATATGAGGATTTCATTAGCCCAGAGGGGTTGTTTGAATTATTGCTGAAGGAGACTATAACCATAGAGAGTGGGCAGTCAACATACCCTGTTGGATGTAGCTCTGATGTATGGTCATTGGGCTGTGTGCTGCTGCGCCTTCTTTTTGGAAATGCTCTCCCCCGGTATGCATTGGAAATGAATGAGGAGAAGAAAGGCTTTGACCTTCTGGCCAATTATATTCGTTGGGTGGAGAGAGTTGATTCCTTGTTGGAAGATAAGTTGGGATCAGAGTATTTGCTGTTGGGGCAGACTCTTAGGAAATGTTTGGAAATAGATCCAGGAAATCGCCCAGATGTGGCAGGTGTGAGAAAATGCATTTGGGATATGCTCATCAAACCTCCATTTGATGTTCTAGGCAGCTTGGAGGTTGCAATAGATAGAAACACTGCTTATTGCTGCTTGATTCTGGGGGAGTTGTGTCAGTTTCCCCAGGAATCCTCAAAACCACAGAGAGAATGTGAGTTGCAGGACAAAGAAGGTGGTGATCTGGTTCAGGACGGGAAGGAAAAACCCGATGGAGATTTTATTGGGGGCCTCTCGAAGGAAATGGTTGAAGTTAAAGATCTAAGAGGCCATCTTGATTGTATCACTGGATTAGTTGCTGGAGGGGGATTTCTGTTTAGCTCCTCATTTGATAAAACTGTCAATGTATGGTCATTGCAGGACTTTTCATATTTACACACCTTTAGAGGTCACGAGAATAAAGTCATGGCTCTGGTTTATGTGGATGGGGAAGAACCCTTGTGCATAAGTGGTGACAGTGGAGGGGGTATATTTATCTGGGGAATAACTTCCCCTTTTGGGCAAAACCCATTGAGGAAGTGGTATGAGCAGAAGGATTGGCGTTTTAGTGGGATCCATTCTATGGCCATTTCGAGAAATCTTTGCCTCTATACTGGTAGTGGTGATAGATTAATAAAAGCTTGGTCATTGAAGGATGGAACTCTAATGTGCACAATGAATGGTCATGCATCTGTTGTCTCCACGCTCGCAATATGTGATGATGTTCTTTACAGTGGTAGTTGGGACGGTACCATTAGGTTGTGGAGTCTTAATGATCACAGCTTGTTGACAGTGCTGGGGGAAGATTTGCCTGGAGAGATGAAAGCTGTCTTCTCTATTACAGTCGATAGACATCTTCTTGTTGCATCTCATGAAAATGGATGCATAAAGGTCTGGAGAAATGACATCTTCATGAGCTCCAAAACATTGCATAGTGGTGCCATTTTTGCCATTAGTATTCAGGGAAAATGCCTCTATACCGGAGGTTGGGAAAAAAAAGTTAATATACAGGAATTGGCAGGAGATGAGTTTCAGTTGGTTGTCAATTCAATTGGACATATTCCTTGCAGTTCTGTTGTAACAGCTATATTATGCCGGCAAGGAACACTATTTGTTGGGTTTGCTGATAAGTCTATCAAGGTTTATCATTGGAATCGATAA 2526 0.4394 MELPECPVCLQTYNEESTIPRVLACGHSVCDACLVELPQRYPTTIRCPACTQLVKYSAQQGPSALPKNIDLLRLCLEHSSSSSDVSQNSKHHSTKNGDDHYEFCPRFWSDELYAVWKDWILPHDVVSIESEPPCRESALGRLLRGRFISSSSLNGRVCIKENQGLSLAPIAYLPPVNHFKLKVSYEARIMICLQGMKEVQRQELALLLKASIKQNRICDAYGLWGDLVDGQLYLVCERHNGSLAEKSSELRCGFVGLAGDALNRDGFVSFSMRGLSICEALIALHTEGLVAGYFGLFCFCFDEFGSIYFNLNEALAKGRKVRLDLMDAISSCTSKIDKQEAICEYVFKYEDFISPEGLFELLLKETITIESGQSTYPVGCSSDVWSLGCVLLRLLFGNALPRYALEMNEEKKGFDLLANYIRWVERVDSLLEDKLGSEYLLLGQTLRKCLEIDPGNRPDVAGVRKCIWDMLIKPPFDVLGSLEVAIDRNTAYCCLILGELCQFPQESSKPQRECELQDKEGGDLVQDGKEKPDGDFIGGLSKEMVEVKDLRGHLDCITGLVAGGGFLFSSSFDKTVNVWSLQDFSYLHTFRGHENKVMALVYVDGEEPLCISGDSGGGIFIWGITSPFGQNPLRKWYEQKDWRFSGIHSMAISRNLCLYTGSGDRLIKAWSLKDGTLMCTMNGHASVVSTLAICDDVLYSGSWDGTIRLWSLNDHSLLTVLGEDLPGEMKAVFSITVDRHLLVASHENGCIKVWRNDIFMSSKTLHSGAIFAISIQGKCLYTGGWEKKVNIQELAGDEFQLVVNSIGHIPCSSVVTAILCRQGTLFVGFADKSIKVYHWNR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0288 841 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Lele01g0288 841 SUPERFAMILY WD40 repeat-like 544 839 IPR036322 GO:0005515
Lele01g0288 841 SMART WD40_4 714 755 IPR001680 GO:0005515
Lele01g0288 841 SMART WD40_4 629 671 IPR001680 GO:0005515
Lele01g0288 841 SMART WD40_4 674 711 IPR001680 GO:0005515
Lele01g0288 841 SMART WD40_4 798 838 IPR001680 GO:0005515
Lele01g0288 841 SMART WD40_4 583 623 IPR001680 GO:0005515
Lele01g0288 841 SMART WD40_4 543 580 IPR001680 GO:0005515
Lele01g0288 841 Gene3D - 630 841 IPR015943 GO:0005515
Lele01g0288 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 681 720 IPR001680 GO:0005515
Lele01g0288 841 SUPERFAMILY Protein kinase-like (PK-like) 197 474 IPR011009 -
Lele01g0288 841 PRINTS G protein beta WD-40 repeat signature 658 672 IPR020472 -
Lele01g0288 841 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Lele01g0288 841 PRINTS G protein beta WD-40 repeat signature 698 712 IPR020472 -
Lele01g0288 841 ProSiteProfiles Protein kinase domain profile. 128 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele01g0288 841 SUPERFAMILY RING/U-box 5 58 - -
Lele01g0288 841 PANTHER - 1 839 IPR044715 -
Lele01g0288 841 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Lele01g0288 841 Gene3D - 537 627 IPR015943 GO:0005515
Lele01g0288 841 Pfam RING-type zinc-finger 6 48 IPR027370 -
Lele01g0288 841 Gene3D Transferase(Phosphotransferase) domain 1 275 470 - -
Lele01g0288 841 SMART ring_2 6 50 IPR001841 -
Lele01g0288 841 Pfam WD domain, G-beta repeat 677 711 IPR001680 GO:0005515
Lele01g0288 841 Pfam WD domain, G-beta repeat 547 580 IPR001680 GO:0005515
Lele01g0288 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Lele01g0288 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 589 IPR001680 GO:0005515
Lele01g0288 841 CDD RING-HC_TRIM32_C-VII 5 51 - -
Lele01g0288 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 681 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0288 Lele-ChrLele01 1633359 1637246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0288 565 783 Acyl Lipid Metabolism Gene Families AT3G18860 30.263 2.52e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0288 01 1633359 1637246 Lele01g0288 01 1633359 1637246 ECH
Lele01g0288 01 1633359 1637246 Lele04g0283 04 1670559 1671095 hybridization