Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0250 ATGCTCTCATGTTGTGATCACGCATCATCATCCCTTACAGAGTTCCTTGATGGATTGATTACTCGATTTGTTTTGGCGGTTGAGCTAAAAAGTGAAATGGTTGGCAAGGAGAACTTGAGGACGGAGGACTTGAACTTATGCTTTGAGCAACTTATGATGGTTGCAGGCGGTGGTAACAGTGGAAACAATACTAGAGGAGTGAAAATGGAAGCCGGGGTGATCACCGAATGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGTCCCTCACTGATAATCAGACGGTGATCGCAGCTTCTGGAGTCTGCCGTGGATGGAGAGATGCCGTTTGCTTCGCCCTTTCCCGTTTGTCACTATCATGGTGTAGCAAGAACATGAATAACTTGGTCCTGTCGCTTATGCCTAAATTCACAAAACTACAAGTTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGATAATGCAGTTGCGACTATCTCAAATTTCTGTCAAGACCTGCAGATGCTGGACCTCAGCAAAAGTTTCAGGCTTACTGATCGGTCTCTGTATGCCTTAGCCCATGGATGTCCTAATCTTACAAATCTGAACATCAGTGGGTGCTCGGCATTTAGCGATGTTGCTCTGGCATACCTAGCCAGTTTCTGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGTATCAGACACTGCATTACAGGCTATAGGACGTTATTGCAACCAATTACAATCTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAACGCTTGACTTGTGTGGCTGTGTCCAAATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGTTGTCCCCATCTGAGGTCCCTTGGGCTGTACTACTGTCAAAACATCACAGACACAGCAATGTATTCATTGGCCCATAGCAAAGTGAACAACAGGATGTGGAGATCTGTGAAAGGAATTAATGAAGAGGATGGGTTAAGAACTCTCAACATTAGCCAATGTACGGCACTCACACCCTCTGCTGTTCAAGCTGTGTGTGATTCATTTCCGGCGCTTCACACCTGCTCCGGCAGGCATTCACTCATCATGAGCGGCTGTTTGAATCTGACTTCTGTGCATTGTGCTTGTGCCGTGCATTCACATCGAGCACTCGCCTCTCTTCCATATCAAGCTCATTGA 1221 0.4529 MLSCCDHASSSLTEFLDGLITRFVLAVELKSEMVGKENLRTEDLNLCFEQLMMVAGGGNSGNNTRGVKMEAGVITEWKDIPVELLMQILSLTDNQTVIAASGVCRGWRDAVCFALSRLSLSWCSKNMNNLVLSLMPKFTKLQVLILRQDKPQLEDNAVATISNFCQDLQMLDLSKSFRLTDRSLYALAHGCPNLTNLNISGCSAFSDVALAYLASFCRKLKCLNLCGCVRAVSDTALQAIGRYCNQLQSLNLGWCENVGDDGVTSLAAGCPDLRTLDLCGCVQITDESVIALANGCPHLRSLGLYYCQNITDTAMYSLAHSKVNNRMWRSVKGINEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHSHRALASLPYQAH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0250 406 Pfam F-box-like 78 111 IPR001810 GO:0005515
Lele04g0250 406 SUPERFAMILY RNI-like 112 320 - -
Lele04g0250 406 SMART LRR_CC_2 244 269 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 165 190 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 270 295 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 112 137 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 191 216 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 217 243 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 296 321 IPR006553 -
Lele04g0250 406 SMART LRR_CC_2 337 362 IPR006553 -
Lele04g0250 406 FunFam F-box protein SKP2B 112 330 - -
Lele04g0250 406 SUPERFAMILY F-box domain 69 112 IPR036047 GO:0005515
Lele04g0250 406 Gene3D Ribonuclease Inhibitor 111 402 IPR032675 -
Lele04g0250 406 Pfam Leucine Rich repeat 244 267 IPR001611 GO:0005515
Lele04g0250 406 Pfam Leucine Rich repeat 270 293 IPR001611 GO:0005515
Lele04g0250 406 Pfam Leucine Rich repeat 296 319 IPR001611 GO:0005515
Lele04g0250 406 PANTHER UNCHARACTERIZED 295 393 - -
Lele04g0250 406 Gene3D - 76 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0250 Lele-ChrLele04 1492148 1497601 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0250 04 1492148 1497601 Lele04g0250 04 1492148 1497601 ECH
Lele01g0253 01 1436990 1440511 Lele04g0250 04 1492148 1497601 hybridization
Lele02g0244 02 1390020 1393130 Lele04g0250 04 1492148 1497601 hybridization