Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0253 ATGCTGTTTCTTTTCTGTAACCCAAAGGAGGTTGAACTAAAAAGTGAAATGATTGGCAAGGAGAACTTGAGGACGGATGACTTGAACTTATGCTTTGAGCAACTTATGATGGTTGCAGGCGGTGGTAACGGTGGAAACACTACTAGAGGAGTGAAAATGGAAGCCGGGGTGATCACCGCATGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGTCCCTCACTGATAATCAGACGGTGATCGCAGCTTCTGGAGTCTGCCGTGGATGGAGAGATGCCGTTTGCTTCGCCCTTTCCCGTTTGTCACTCTCCTGGTGTAGCAAGAACATGAATAACTTGGTCCTGTCGCTTATGCCTAAATTCACAAAACTACAAGTTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGATAATGCAGTTGAGAGTATCTCAAATTTCTGTCACGACCTGCAGATGTTGGACCTCAGCAAAAGTTTCAGGCTTACTGATCGTTCTCTGTATGCCTTAGCCCATGGATGTCCAAATCTTACAAATCTGAACATCAGTGGGTGCTCGGCATTTAGCGATGTTGCTTTGGCATACCTAGCCAGTTTCTGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGCATCAGACGCTGCATTACAGGCTATAGGACATTATTGCCACCAATTACAATCTTTGAACATTGGATGGTGTGAAAATGTTGGTGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAATACTTGACTTGTGTGGCTGTGTCCAAATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGGTGTCCCCATCTGAGGTCCCTTGGGCTGTACTACTGTCAAAACATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATAACAGGATGTGGAGATCTGTGAAAGGAATTAATGAAGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGTACGGCACTCACACCCTCCGCTGTTCAAGCCGTGTGCGATTCGTTCCCGGCGCTTCATACCTGCTCCGGCAGGCATTCACTCATCACGAGTGGCTGTTTGAACCTAACCTCTGTGCATTGTGCTTGTGCTGTGCATTCACATCGAGCACTCGCCTCTCTTCCATATCAAGCTCATTGA 1173 0.4561 MLFLFCNPKEVELKSEMIGKENLRTDDLNLCFEQLMMVAGGGNGGNTTRGVKMEAGVITAWKDIPVELLMQILSLTDNQTVIAASGVCRGWRDAVCFALSRLSLSWCSKNMNNLVLSLMPKFTKLQVLILRQDKPQLEDNAVESISNFCHDLQMLDLSKSFRLTDRSLYALAHGCPNLTNLNISGCSAFSDVALAYLASFCRKLKCLNLCGCVRAASDAALQAIGHYCHQLQSLNIGWCENVGDDGVTSLAAGCPDLRILDLCGCVQITDESVIALANGCPHLRSLGLYYCQNITDRAMYSLAHSKVNNRMWRSVKGINEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLITSGCLNLTSVHCACAVHSHRALASLPYQAH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0253 390 Gene3D - 60 95 - -
Lele01g0253 390 Gene3D Ribonuclease Inhibitor 96 317 IPR032675 -
Lele01g0253 390 SUPERFAMILY RNI-like 95 350 - -
Lele01g0253 390 SUPERFAMILY F-box domain 52 96 IPR036047 GO:0005515
Lele01g0253 390 Pfam F-box-like 62 95 IPR001810 GO:0005515
Lele01g0253 390 FunFam F-box protein SKP2B 96 314 - -
Lele01g0253 390 Pfam Leucine Rich repeat 228 251 IPR001611 GO:0005515
Lele01g0253 390 Pfam Leucine Rich repeat 254 277 IPR001611 GO:0005515
Lele01g0253 390 Pfam Leucine Rich repeat 280 303 IPR001611 GO:0005515
Lele01g0253 390 SMART LRR_CC_2 228 253 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 175 200 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 254 279 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 149 174 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 280 305 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 201 227 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 96 121 IPR006553 -
Lele01g0253 390 SMART LRR_CC_2 321 346 IPR006553 -
Lele01g0253 390 PANTHER UNCHARACTERIZED 98 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0253 Lele-ChrLele01 1436990 1440511 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0253 01 1436990 1440511 Lele01g0253 01 1436990 1440511 ECH
Lele01g0253 01 1436990 1440511 Lele03g0259 03 1421014 1423357 hybridization
Lele01g0253 01 1436990 1440511 Lele04g0250 04 1492148 1497601 hybridization