Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0244 ATGGCTCTGGAGAACTGTTTACGAGTGAGCACAGTGGGCATGGCCAGACCTCAATGCATTCATCCATTTTCTTCTAGGGCAAAGATTGTTGTCCCCAATTTCAAAGGATTCAAATCAACGGTATCAAACCCCTCTCTTAAATCAACTACTGGAAACTACCGAAGATCCCGTTTTATTTGCAAGGCTCGGGAAGCTGTTGACGAAGTTCGAGTAGTGACAGATTCAACCTGGAATAACCTGGTGATAGCGAGTGAAACGCCTGTGCTGGTGGAGTTTTGGGCGCCATGGTGTGGACCGTGCAGGATGATAGCTCCTGTGATTGATGAATTGGCGAAAGAGTATGCTGGCAAAATTGCATGCTTCAAGCTCAACACTGATGACAGTCCGAATATACCCACACAATACGGAATCAGGAGCATACCAACAGTTCTCTTCTTCAAGAAAGGTGAGAAAAAAGAGAGCGTAATTGGTGCCGTCCCCAAGTCTACCCTGTCCGCATCGCTGGAGAAATATCTAGATACCTGA 525 0.4648 MALENCLRVSTVGMARPQCIHPFSSRAKIVVPNFKGFKSTVSNPSLKSTTGNYRRSRFICKAREAVDEVRVVTDSTWNNLVIASETPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIACFKLNTDDSPNIPTQYGIRSIPTVLFFKKGEKKESVIGAVPKSTLSASLEKYLDT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0244 174 ProSitePatterns Thioredoxin family active site. 89 107 IPR017937 -
Lele04g0244 174 CDD TRX_family 81 169 - -
Lele04g0244 174 FunFam Thioredoxin 63 172 - -
Lele04g0244 174 SUPERFAMILY Thioredoxin-like 57 173 IPR036249 -
Lele04g0244 174 Pfam Thioredoxin 69 169 IPR013766 -
Lele04g0244 174 ProSiteProfiles Thioredoxin domain profile. 35 174 IPR013766 -
Lele04g0244 174 PANTHER GEO12009P1 61 173 - -
Lele04g0244 174 Gene3D Glutaredoxin 69 174 - -
Lele04g0244 174 PRINTS Thioredoxin family signature 88 96 - -
Lele04g0244 174 PRINTS Thioredoxin family signature 96 105 - -
Lele04g0244 174 PRINTS Thioredoxin family signature 136 147 - -
Lele04g0244 174 TIGRFAM thioredoxin: thioredoxin 73 170 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0244 Lele-ChrLele04 1450453 1451211 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0244 04 1450453 1451211 Lele04g0244 04 1450453 1451211 ECH
Lele01g0246 01 1399410 1400799 Lele04g0244 04 1450453 1451211 hybridization
Lele02g0238 02 1353070 1354098 Lele04g0244 04 1450453 1451211 hybridization