Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0246 ATGAACAGGTCCCCCAAGCATCGACCGGGTGTTGCCCTTGGTCCATATCAGATCTCAGGATGGCGTGATGAAAGCAACTCTAACATTACGTGCTTCGGGCAGTATTCTAGTGTCTCTGGTTCCAAGAGTTTTGGAAAATACCGAGGGTTGGATAAATTTCAAAGTCGATCAGAGGAGGAGGAAAAGCCTGCGGAAGCTTTTCAGCAGAAAGACAAAAGCAGCATGGCTCTGGAGAACTGTTTACGAGTGAGCACAGGGGGCATGGCCAGACCTCAATGCATTCATCCATTTTCTTCTAGGGAAAAGACTGTTGTCCCCAATTTCAAAGGATTCAAATCAACAGTATCGAACCCCTCTCTTAAATCAACCACTGGAAATTACCGAAGATCCCGTTTTATTTGTCATGCTCGAGAAGCTGTTAACGAAGTTCGAGTAGTGACAGATTCAACCTGGAATAACCTGGTGATAGCGAGTGAAACGCCAGCGCTGGTGGAGTTCTGGGCGCCCTGGTGTGGACCGTGCAGGATAATAGCCCCTGTGATCGATGAATTGGCGAAAGAGTATGCTGGCAAAATTGCATGCTTCAAGCTCAACACCGATGACAGTCCCAACACACCCACACAATACGGAATCAGGAGCATACCAACAGTTCTCTTCTTCAAGAATGGTGAGAAAAAGGAAAGCGTAATTGGTTCGGTCCCCAAGTCTACCCTGTCCGCGACGCTGGAGAAATATCTAGATATCTGA 747 0.4739 MNRSPKHRPGVALGPYQISGWRDESNSNITCFGQYSSVSGSKSFGKYRGLDKFQSRSEEEEKPAEAFQQKDKSSMALENCLRVSTGGMARPQCIHPFSSREKTVVPNFKGFKSTVSNPSLKSTTGNYRRSRFICHAREAVNEVRVVTDSTWNNLVIASETPALVEFWAPWCGPCRIIAPVIDELAKEYAGKIACFKLNTDDSPNTPTQYGIRSIPTVLFFKNGEKKESVIGSVPKSTLSATLEKYLDI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0246 248 FunFam Thioredoxin 137 246 - -
Lele01g0246 248 SUPERFAMILY Thioredoxin-like 131 247 IPR036249 -
Lele01g0246 248 ProSiteProfiles Thioredoxin domain profile. 99 247 IPR013766 -
Lele01g0246 248 PANTHER GEO12009P1 123 246 - -
Lele01g0246 248 ProSitePatterns Thioredoxin family active site. 163 181 IPR017937 -
Lele01g0246 248 TIGRFAM thioredoxin: thioredoxin 147 245 IPR005746 GO:0015035
Lele01g0246 248 Pfam Thioredoxin 143 243 IPR013766 -
Lele01g0246 248 Gene3D Glutaredoxin 143 247 - -
Lele01g0246 248 PRINTS Thioredoxin family signature 210 221 - -
Lele01g0246 248 PRINTS Thioredoxin family signature 170 179 - -
Lele01g0246 248 PRINTS Thioredoxin family signature 162 170 - -
Lele01g0246 248 CDD TRX_family 155 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0246 Lele-ChrLele01 1399410 1400799 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0246 01 1399410 1400799 Lele01g0246 01 1399410 1400799 ECH
Lele01g0246 01 1399410 1400799 Lele03g0253 03 1381239 1382005 hybridization
Lele01g0246 01 1399410 1400799 Lele04g0244 04 1450453 1451211 hybridization