Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0150 ATGCTTAACTCAATGGCGACTCCGCTCTCTTCCGCCTTTCCCGCCTCTTATCTCCCGCCACCCTCTTCCTCTTCTGCTTCTCCCTCCACTTCATCTCCTCTTTTTCTGAGGCAATCCACAAAGTCCTTAGCCTTCTTTAGTCCCCCCGAGATACTCAAATGTGCTGCTATTGCGCCCAGAACCAGAAGGAACTGTGCATGTTCACTCCTCGTTCGTATGTCCTGGGATGGACCCCTCTCTTCCGTCAAATTGATCACACAGGCCAAAAATGCTGAGTTGACGGATACGGTGAAGCAGCATGTGGAGGAGAAGTTTGGGAAGGCAGTTCAGAACCATAGTCACCTGGTTAGGGAGGTGGATGTGAGATTATCCGTCCGAGGAGGAGGAGAATTCGGGAAAGGACCCCTCACCAAAAGATGTGAGGTGACATTGTTCACGAAGAGGCATGGAGTGGTGCGGGCCGAGGAAGAAGCAGAGACCATGTATGGGAGTATAGATTTGGTATCCTCAATCATTCAGAGAAAGCTGAGGAAGATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGCTTCAATAGGTTAAAAGTCAGGGAGCCCGTAACTCCTTTGCCCCTCGATGATACAGAGACTGACACACCTCCCCAGCAGCAGCAGGAGGAACAATTCATTGACGAGGTTGCGCGCACAAAATACTTTGACATGCCACCGTTGACAGTAAGCGAAGCAATTGAGCAGCTGGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGACAATGGGGAGATCAATATAGTGTACAGAAGGAAAGAAGGAGGCTATGGAGTCATCATACCCAAAGGAGACGGCAAAGCGGGGAAATTGGAGCCTATGGTGGTGGAAACAGCAAGAGAAACCTCCCTCTCAGAATGA 921 0.4929 MLNSMATPLSSAFPASYLPPPSSSSASPSTSSPLFLRQSTKSLAFFSPPEILKCAAIAPRTRRNCACSLLVRMSWDGPLSSVKLITQAKNAELTDTVKQHVEEKFGKAVQNHSHLVREVDVRLSVRGGGEFGKGPLTKRCEVTLFTKRHGVVRAEEEAETMYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTPLPLDDTETDTPPQQQQEEQFIDEVARTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEDNGEINIVYRRKEGGYGVIIPKGDGKAGKLEPMVVETARETSLSE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0150 306 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 226 279 IPR032528 -
Lele04g0150 306 FunFam ribosome-binding factor PSRP1, chloroplastic 238 289 - -
Lele04g0150 306 Gene3D - 83 194 IPR036567 -
Lele04g0150 306 TIGRFAM yfiA: ribosomal subunit interface protein 84 187 IPR003489 GO:0044238
Lele04g0150 306 PANTHER 30S RIBOSOMAL PROTEIN 69 292 - -
Lele04g0150 306 CDD RaiA 83 182 IPR003489 GO:0044238
Lele04g0150 306 Hamap Ribosome hibernation promoting factor [hpf]. 82 283 IPR034694 -
Lele04g0150 306 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 84 189 IPR036567 -
Lele04g0150 306 Gene3D - 238 288 IPR038416 -
Lele04g0150 306 FunFam Ribosome-binding factor PSRP1, chloroplastic 84 187 - -
Lele04g0150 306 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 86 182 IPR003489 GO:0044238
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0150 Lele-ChrLele04 852869 854339 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0150 04 852869 854339 Lele04g0150 04 852869 854339 ECH
Lele01g0149 01 865069 868623 Lele04g0150 04 852869 854339 hybridization
Lele02g0154 02 850860 852460 Lele04g0150 04 852869 854339 hybridization