Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0154 ATGGCCACGTCACCAGGACCGGGTCCCACACTGCATGCATCTTCCGTCGTTTCCCCACCCTCACTTTGCTTTCCTTATCCCCTCCCTCACTGTTCTCTTCTCCCAGACAAACCCACCTTCATGCTTAACTCAATGGCGACTCCGCTCTCTTCCGCCTTTCACGCCTCTTATCTCCCGCCACCCTCTTCTTCTTCTTCTTCTGCTTCTCCCTCCACTTCATCTCCTCTTTTTCTGAGACAATCCACAAAGTCCTTAGCCTTCTTTAGTCCCCACGATATACTCCGATGTGCTGCTATTGCGCCCAGCACCAGAAGGAACCGTGCAGGTTCACTCCTTGTTCGTATGTCCTGGGATGGACCCCTCTCTTCCGTCAAATTGATCACACAGGCCAAAAATGTTGAGTTGACGGATACGGTGAAGCAGCATGTGGAGGAGAAGTTTGGGAAGGCAGTTCAGAACCATAGTCACCTGGTTAGGGAGGTGGATGTGAGATTATCCGTCCGAGGAGGAGGAGAATTCGGGAAAGGCCCCCTCACCAAAAGATGTGAGGTAACATTGTTCACGAAGAGGCATGGAGTGGTGCGGGCCGAGGAAGAAGCAGAGACTATGTATGGGAGTATAGATTTGGTATCCTCAATCATTCAGAGAAAGCTGAGGAAGATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGCTTCAATAGGTTAAAAGTCAGGGAGCCCGTAACTCCTTTGCCCCTCGATGACACAGAGACTGGCACACCTCCCCAGCAGCAGCAGGAGGAACAATTCATGGATGAGGTTGTGCGCACAAAATACTTTGACATGCCACCGTTGACAGTAAGCGAAGCAATTGAGCAGCTGGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGACAATGGGGAGATCAATATATTGTACAGAAGGAAAGAAGGAGGCTATGGAGTCATCATACCCAAAGGATACGGCAAAGCGGAGAAATTGGAGCCTGTGGTGGTGGAAACAGCAAGAGAAACCTCCCTCTCAGAATGA 1047 0.4967 MATSPGPGPTLHASSVVSPPSLCFPYPLPHCSLLPDKPTFMLNSMATPLSSAFHASYLPPPSSSSSSASPSTSSPLFLRQSTKSLAFFSPHDILRCAAIAPSTRRNRAGSLLVRMSWDGPLSSVKLITQAKNVELTDTVKQHVEEKFGKAVQNHSHLVREVDVRLSVRGGGEFGKGPLTKRCEVTLFTKRHGVVRAEEEAETMYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTPLPLDDTETGTPPQQQQEEQFMDEVVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEDNGEINILYRRKEGGYGVIIPKGYGKAEKLEPVVVETARETSLSE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0154 348 CDD RaiA 125 224 IPR003489 GO:0044238
Lele02g0154 348 Hamap Ribosome hibernation promoting factor [hpf]. 124 325 IPR034694 -
Lele02g0154 348 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 128 224 IPR003489 GO:0044238
Lele02g0154 348 FunFam Ribosome-binding factor PSRP1, chloroplastic 126 229 - -
Lele02g0154 348 Gene3D - 280 327 IPR038416 -
Lele02g0154 348 PANTHER 30S RIBOSOMAL PROTEIN 110 334 - -
Lele02g0154 348 Gene3D - 125 236 IPR036567 -
Lele02g0154 348 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 126 231 IPR036567 -
Lele02g0154 348 TIGRFAM yfiA: ribosomal subunit interface protein 126 229 IPR003489 GO:0044238
Lele02g0154 348 FunFam ribosome-binding factor PSRP1, chloroplastic 280 331 - -
Lele02g0154 348 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 268 321 IPR032528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0154 Lele-ChrLele02 850860 852460 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0154 02 850860 852460 Lele02g0154 02 850860 852460 ECH
Lele02g0154 02 850860 852460 Lele03g0158 03 849614 853935 hybridization
Lele02g0154 02 850860 852460 Lele04g0150 04 852869 854339 hybridization