Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0141 ATGGGTGAAGAAGCTAAACAGGTGAGCCTTCTTTTTGGCATTGTCACTGAAAAACTGGGATTTCTTTGCATAACTATATCCACATTAGCTTCAGCCTTGAGAACTTGTGTGTTCATTTTTGGTGGACAGGAACAACCTAAGGCAGAGGCCAAGCCAGAGGAGAAGAAAGAAGAGAAAGCAGAGGAAAAGCCGGCGGAGGAGAAGAAAGAAGAGGAAAAGCCAGCAGAGGAGAAGAAGGAAGAGCCTAAGCCACAATCACCATGCGTGCTGTCTGTGGACTTACATTGTGTGGGATGTGCCAAGAAAATAGAGAGATCTATTATGAAAATGAGAGGAGTTGAGGGGGTGGTCATTGATATGGCTAAGAATGAAATAACCATAAAAGGGATAGTGGAACCCCAAGCAATCTGCGACAAAATTACCAAGAGAACAAGGAGAAGAGCCAAAGTCATTTCTCCATTGCCCGCAGCAGAAGGAGAACCTATACCAGAAGTTGTTACTTCTCAGGTTAGTGGACCAGCAACCGTGGAACTTAATGTGAACATGCACTGTGAGGCCTGTGCTGAGCAACTCGAGAGGAAGATTCTCAAAATGAGAGGAGTGCAAACTGCAGTGACAGAATTAAGCACGGGGAAGGTTACTGTGACAGGGACGATGGATGCGAACAAACTAGTGGAATATGTGTATAGACGCACCAAGAAGCAAGCGAAAATAGTTCCACAGCCAGAACCTGAACCAGAGAAGAAGGAAGAACCTAAAGAAGCAGAGAAACCAGCAGAAGAGGCAAAGGCTGAGGAGAAAAGGGAAGAGAAGAAAGAAGAGGAGAAACCTGCAGAGGAGGCCAAGAAGGAAGAAGAGGGTAACAAAGAAGGATCTGGGGAAGACAAGGGTGAGAATAAAGAAGAAAAAGGTGGCGAAGAAAGCAAGGAAGAGGCCAAGAAAGAAGGAGGAGGAGATAACAATGGGGTGGTTGTGATTGATGATGAAGGGATTAAGAGGATGATGTATTATTATCAGCAGCCACTCTATTTGATTGAACGAATCCCACCTCCTCAGCTCTTCAGCGATGAAAACCCCAATGCATGCTGCATTTCATAA 1098 0.4517 MGEEAKQVSLLFGIVTEKLGFLCITISTLASALRTCVFIFGGQEQPKAEAKPEEKKEEKAEEKPAEEKKEEEKPAEEKKEEPKPQSPCVLSVDLHCVGCAKKIERSIMKMRGVEGVVIDMAKNEITIKGIVEPQAICDKITKRTRRRAKVISPLPAAEGEPIPEVVTSQVSGPATVELNVNMHCEACAEQLERKILKMRGVQTAVTELSTGKVTVTGTMDANKLVEYVYRRTKKQAKIVPQPEPEPEKKEEPKEAEKPAEEAKAEEKREEKKEEEKPAEEAKKEEEGNKEGSGEDKGENKEEKGGEESKEEAKKEGGGDNNGVVVIDDEGIKRMMYYYQQPLYLIERIPPPQLFSDENPNACCIS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0141 365 CDD HMA 177 237 IPR006121 GO:0046872
Lele04g0141 365 Pfam Heavy-metal-associated domain 179 226 IPR006121 GO:0046872
Lele04g0141 365 Pfam Heavy-metal-associated domain 90 139 IPR006121 GO:0046872
Lele04g0141 365 MobiDBLite consensus disorder prediction 235 324 - -
Lele04g0141 365 SUPERFAMILY HMA, heavy metal-associated domain 170 234 IPR036163 GO:0046872
Lele04g0141 365 MobiDBLite consensus disorder prediction 235 317 - -
Lele04g0141 365 MobiDBLite consensus disorder prediction 47 84 - -
Lele04g0141 365 CDD HMA 89 142 IPR006121 GO:0046872
Lele04g0141 365 MobiDBLite consensus disorder prediction 47 86 - -
Lele04g0141 365 Gene3D - 172 238 - -
Lele04g0141 365 Gene3D - 85 148 - -
Lele04g0141 365 ProSiteProfiles Heavy-metal-associated domain profile. 181 228 IPR006121 GO:0046872
Lele04g0141 365 SUPERFAMILY HMA, heavy metal-associated domain 89 143 IPR036163 GO:0046872
Lele04g0141 365 Coils Coil 264 284 - -
Lele04g0141 365 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 49 365 IPR044258 GO:0046872
Lele04g0141 365 ProSiteProfiles Heavy-metal-associated domain profile. 94 142 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0141 Lele-ChrLele04 808154 809980 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0141 04 808154 809980 Lele04g0141 04 808154 809980 ECH
Lele01g0139 01 817452 822737 Lele04g0141 04 808154 809980 hybridization
Lele02g0144 02 808256 814718 Lele04g0141 04 808154 809980 hybridization