Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1333 ATGTCGGTTTCCTTGCCAATAAAGGAAAAGGGTCGGCCTCTACCAAAATTTGGTGAATGGGATGTCAATGATCCTGCCTCAGCTGAAGGATTCACCGTGATCTTTAACAAGGCTAGGGATGAGAAAAAGACAGGTGGCAAACCTGAGTCGCCTGGAAAGGCTGATCCTCAAAACAGGCCTGCTGTAGAACCTGCCAAACCTCAGAGTAAAAAATGGTTCTGCTGCATGCAACCTCCCGCGGAGTCATAG 249 0.4859 MSVSLPIKEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKADPQNRPAVEPAKPQSKKWFCCMQPPAES 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1333 82 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 9 44 IPR008700 -
Lele03g1333 82 MobiDBLite consensus disorder prediction 1 24 - -
Lele03g1333 82 MobiDBLite consensus disorder prediction 38 82 - -
Lele03g1333 82 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 8 74 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1333 Lele-ChrLele03 8042179 8044999 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1333 03 8042179 8044999 Lele03g1333 03 8042179 8044999 ECH
Lele01g1323 01 8081439 8083947 Lele03g1333 03 8042179 8044999 hybridization
Lele02g1592 02 19805010 19809275 Lele03g1333 03 8042179 8044999 hybridization