Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1323 ATGCCTGAAAAGGGTCGGCCTCTACCAAAATTTGGTGAATGGGATGTCAATGATCCTGCCTCAGCTGAAGGATTCACCGTGATCTTTAACAAGGCTAGGGATGAGAAAAAGACAGGTGGCAAACCTGAGTCGCCTGGAAAGGCTGATCCTCAAAACAGGCCTGCTGTAGAACCTGCCAAATCTCAGAGTAAAAAATGGTTCTGCTGCATGCAACCTCCCGCGGAGTCATAG 231 0.4892 MPEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKADPQNRPAVEPAKSQSKKWFCCMQPPAES 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1323 76 MobiDBLite consensus disorder prediction 32 76 - -
Lele01g1323 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 2 38 IPR008700 -
Lele01g1323 76 MobiDBLite consensus disorder prediction 1 20 - -
Lele01g1323 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 69 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1323 Lele-ChrLele01 8081439 8083947 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1323 01 8081439 8083947 Lele01g1323 01 8081439 8083947 ECH
Lele01g1323 01 8081439 8083947 Lele03g1333 03 8042179 8044999 hybridization
Lele01g1323 01 8081439 8083947 Lele04g1581 04 20673688 20676829 hybridization