Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1175 ATGTTGCTTTCTTGTTCCCATATAGAGCTAAGGGACTCTAGCCCCATACAGAGCGATACATGGAGCGAGATAGAAATTAGAGATAGCGAGAGAGAAGGAAAGATGAGGACAGAGACGATGAAGCATGGACCTGGAGCTCTTTTGAGCAATGGACACCCTGGAAACTTGTCCAGCTCGAGATTTTCGTCTCTTCTTGCCTCCAAAGATCGTGATTTTCTACTCTCTCCAACCGGGTCTCAGGTGAAAGTTTGTGATATGGAAGGTAAAGTGGTGGGACTTTTGTTCGGTGCTAACTGCTTTGATCGCCATGGTGGCTTGGCGCCCGTCCGCGGTACTTACGTCGTCGTTTTTATCCCAACGGAGGATGGGGCGGTGAAGGAGAAGATGCTCCAGCTTCACTCTTGGACATGTCGCGGTGCTTTCACAGCAAAATCATTTCGTACCTCACATGCCCTCTTCTCCGCTAGGGGTCGGGCTCATAAGTTTCCTCTCGGTGTTGCGAGAACAATTAGAGGCTGTTGTGGTTTAGACGTAGACTTGGACTCCGATGGTGAGCAAGAGCCGGTCTTTGCTAAGAGGACGAATTACGCCGGCGTGCGGTTGGAGGAGACTGTCGATGCCGGTTTAGGAAAGCTCAGGCTCGATTCTTGGATTTCTTCCCGCATTAGCGGCATAAGTAGGGCTCGTGTGCAGTCAAGTATTAGAGCGGGGCTTGTTCATGTCAACGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAAGGATGGGGATAAGATCAATTGCACGATTTCAGAGTTACAACAGTTGAGAGCGGAGCCAGAACATATGGAGTTGGATATCGTTTATGAAGATGAGCATGTGCTAGTAATCAATAAACCTGCGCACTTGGTTGTGCATCCAGCACCTGGAAATACATCTGGTACTCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGCTGAAATTTCAAACAAGGAAGCTCTTTCAGAGACTGAAGATTCTGATGATGATCTTGATAGCTACTCCATTCATCCAAGTACCAGTGAAGGTTTACGATCACATTCCAGCATGTGTGGAGCGTCAGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTGGCGAAGGATGAACATTCCCATATCCATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTCAGTCTCACTGTTGGGGTTCCCTCTCCAACTGCTGGGCGTGTTGAGGTTCCAGTTGGTCGTGACCCTAATAACCGGATTCGAATGACTGCTGTAGCTGGATCAGTTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAACTGAGATACTTGCTAAGGGTGCTTGTGCATTGGTTGAATGGAAGTTAGAAACCGGGCGTACTCATCAGATACGTGCACACGCTAAGTATCTAGGAGTTCCTCTGCTGGGTGATGAGGTGTACGGAGGGACGAAGAGCATGGCCTTATCACTACTTCAGCCCAGAACACCGGCAACGCTGCGTGGCAAAATTATACAAATGGTTTCTATGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTTGGGTTTCGGCATCCCCATACAGGAGAACAGTTGCATTTTTCATGTCAACCCCCTCCAGACTTTGATGAGATTTTGAGCCAGCTTCTGACAATTGGCTGA 1707 0.4786 MLLSCSHIELRDSSPIQSDTWSEIEIRDSEREGKMRTETMKHGPGALLSNGHPGNLSSSRFSSLLASKDRDFLLSPTGSQVKVCDMEGKVVGLLFGANCFDRHGGLAPVRGTYVVVFIPTEDGAVKEKMLQLHSWTCRGAFTAKSFRTSHALFSARGRAHKFPLGVARTIRGCCGLDVDLDSDGEQEPVFAKRTNYAGVRLEETVDAGLGKLRLDSWISSRISGISRARVQSSIRAGLVHVNGRVVDKVSFNVKDGDKINCTISELQQLRAEPEHMELDIVYEDEHVLVINKPAHLVVHPAPGNTSGTLVNGILHHCNLPNAEISNKEALSETEDSDDDLDSYSIHPSTSEGLRSHSSMCGASVRPGIVHRLDKGTSGLLVVAKDEHSHIHLSEQFKLRTIKRVYVSLTVGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSVNSRKARYAASRYKVTEILAKGACALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLQPRTPATLRGKIIQMVSMLDRPCLHALTLGFRHPHTGEQLHFSCQPPPDFDEILSQLLTIG 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1175 568 ProSitePatterns Rlu family of pseudouridine synthase signature. 369 383 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele03g1175 568 Pfam S4 domain 213 259 IPR002942 GO:0003723
Lele03g1175 568 MobiDBLite consensus disorder prediction 343 357 - -
Lele03g1175 568 SUPERFAMILY Pseudouridine synthase 272 562 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele03g1175 568 FunFam RNA pseudouridine synthase 2 chloroplastic 199 267 - -
Lele03g1175 568 MobiDBLite consensus disorder prediction 327 358 - -
Lele03g1175 568 Gene3D - 198 268 IPR036986 GO:0003723
Lele03g1175 568 Gene3D Pseudouridine synthase 269 553 - -
Lele03g1175 568 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 216 561 - -
Lele03g1175 568 SMART s4_6 212 270 IPR002942 GO:0003723
Lele03g1175 568 MobiDBLite consensus disorder prediction 27 54 - -
Lele03g1175 568 CDD S4 213 291 - -
Lele03g1175 568 SUPERFAMILY Alpha-L RNA-binding motif 211 299 - -
Lele03g1175 568 CDD PseudoU_synth_RluA_like 287 538 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele03g1175 568 Pfam RNA pseudouridylate synthase 286 483 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele03g1175 568 ProSiteProfiles S4 RNA-binding domain profile. 212 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1175 Lele-ChrLele03 6869106 6876042 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1175 03 6869106 6876042 Lele03g1175 03 6869106 6876042 ECH
Lele01g1161 01 6896254 6902875 Lele03g1175 03 6869106 6876042 hybridization
Lele02g1428 02 18576107 18585021 Lele03g1175 03 6869106 6876042 hybridization