Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1172 ATGATTGACCTCGCTGGGAAGCTCAAGCACTTCGATTTAGCTTGGCATCTCATAGATTTGATGAAAGCCCGAGTTGTTCAAATAACCGTTGAGACGTTCTCTTTCCTCGTCCGGCGATACGTGAGAGCAGGATTGGCCGCGGAGGCCGTCCACACTTTTAGCCGTATGGAAGATTATGGCTGCACTCCTGACAAGATTGCTTTCTCAATTGTCATTAGTAACATTTCAGAGGCCGAGCGGGTGTTTGGGGAGGTGAAGCATGCTGGAATCAAACCCAATGTTTATACTTACAGCATCGTGATTGATTCACTATGTCGTTGTGGACAAATCACTCGTGCGCATGATGTTTTCTCTGAGATGTTAGATGTTGGTTGTGATCCAAATTCCATTACTTTCAACAATCTCATGCGCGTTCACGTCAAAGCTGGAAGGACTGAGAAGGTACTGCAAGTTTATAATCAGATGAAGAGACTTGGATGTGCTCCTGATACGATCACCTATAATTTCCTTATAGAGACACATTGCAAATATGATAATCTTGATGAAGCTACCAGGGTTCTCAATTCAATGGTCAAGAAAGGGCGTGCTCTTAATGCTTCTACTTTCAACCTTATATTCAGATGCGTAGCTAAGTTACATGATATAAACGGTGCTCATAGGTTGTATGCTAAAATGAAGGAACTCAGGTGTCAACCAAATACCCTGACCTACAACATATTAATGGGCATGTTCTCTCATGCGAGATCTACTGATATGGTCCTCAAAATGAAGAAGGAAATGGATGAGAATGAAGTTGAGCTCAATGTGAATACTTTCAGGTTGTTGATCTCAATGTATTGTGGAATGGGACACTGGAACAATGCGTACAAGTTGCTGAGAGATATGGTTGTAGAGAAGTGCATAAAACCAAACCAAGGGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGTTCCATATAG 1026 0.4269 MIDLAGKLKHFDLAWHLIDLMKARVVQITVETFSFLVRRYVRAGLAAEAVHTFSRMEDYGCTPDKIAFSIVISNISEAERVFGEVKHAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMLDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCAPDTITYNFLIETHCKYDNLDEATRVLNSMVKKGRALNASTFNLIFRCVAKLHDINGAHRLYAKMKELRCQPNTLTYNILMGMFSHARSTDMVLKMKKEMDENEVELNVNTFRLLISMYCGMGHWNNAYKLLRDMVVEKCIKPNQGVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1172 341 Pfam Pentatricopeptide repeat domain 18 75 IPR002885 -
Lele03g1172 341 Pfam Pentatricopeptide repeat domain 185 244 IPR002885 -
Lele03g1172 341 Gene3D Tetratricopeptide repeat domain 77 179 IPR011990 GO:0005515
Lele03g1172 341 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Lele03g1172 341 Gene3D Tetratricopeptide repeat domain 180 340 IPR011990 GO:0005515
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Lele03g1172 341 Pfam PPR repeat 89 120 IPR002885 -
Lele03g1172 341 Pfam PPR repeat 265 296 IPR002885 -
Lele03g1172 341 Pfam PPR repeat family 127 176 IPR002885 -
Lele03g1172 341 PANTHER OS03G0856100 PROTEIN 1 73 - -
Lele03g1172 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Lele03g1172 341 SUPERFAMILY TPR-like 104 228 IPR011990 GO:0005515
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 236 268 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 165 196 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 32 64 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 130 164 IPR002885 -
Lele03g1172 341 TIGRFAM PPR: pentatricopeptide repeat domain 95 128 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1172 Lele-ChrLele03 6862881 6864026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1172 21 338 Glycosyltransferase AT1G05670 24.691 3.60e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1172 03 6862881 6864026 Lele03g1172 03 6862881 6864026 ECH
Lele01g1159 01 6890326 6891463 Lele03g1172 03 6862881 6864026 hybridization
Lele02g1426 02 18570471 18572054 Lele03g1172 03 6862881 6864026 hybridization