Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0953 ATGGGTGTCATTTCCATTTTGCTCAGTCTGGTTCTGCTTTTTACTCTTTTCTCCTTCTCTTATTCCGCCAACACCTCTGAACTGTTTGAAAGCTGGTGCAAGCGGCATGGCAAAACCTACTCTTCCGAAGCGGAGAAGCAATACAGGTTCAAAGTATTCGAGGACAACTATGCCTTTGTTTCCAATCACAATCAAATGGGCAATTCTAGTTACACGCTCTCGCTCAATGCCTTCGCTGATCTCAGTCACCATGAATTTAAGGTATCTCGTTTAGGTCTATCACCCGCCTTGCTTCGATTCGACCATCGAGCGCCTCAGCAGCCCGATGACATTCTCCTAGACAGTCTTCCTTCTGAGGTTGATTGGAGAAAGAAAGGGGCGGTAACTCAGGTCAAAGACCAAGGAAGTTGTGGCGCTTGTTGGTCATTCTCAGCAACAGGAGCTATCGAAGGTATAAATAAGATTGTTACAGGCTCTGTCGTTAGCCTCTCTGAACAAGAATTGGTAGACTGTGATAGAACCTACAACACTGGCTGCGAGGGTGGACTCATGGATTATGCTTATCAGTTTGTCATTGATAACCATGGGATTGACACAGAGGCAGATTACCCATACCAAGGTCGTGAAAGGTCTTGTATCAAGGATAAGTTAAATAGACGTGTTGTTACCATTGATGGTTATACTGATGTGCCTTCGAACGACGAGAAGCAGCTACAAAAGGCTGTTGCAACCCAGCCCGTCAGTGTTGGCATATGTGGGAGTGATAGAGCTTTCCAGTTATACACAAAGGGTATTTTCTCTGGCCCATGTTCAACTTCTTTGGATCATGCGGTGTTGATTGTAGGATATGGTTCTGAAAATGGAGTGGATTACTGGATTGTGAAGAATTCTTGGGGAACTAGTTGGGGAATGGATGGTTACATACACATGCGGCGAAACACCGGCAACTCGGAAGGGTTATGTGGAATCAACATGTTAGCATCATATCCAACCAAGACCCACCCTAATCCTCCTCCTCCATCTCCTCCAACTCCTGTTAAATGTAACATCTTCACTTATTGTAAACAAGGAGAAACCTGTTGCTGTGCAAGACACTTTATTGGTATATGCATTTCATGGAAATGTTGTGGCTTATCATCTGCCGTCTGCTGCAAGGACAATCGCCATTGCTGCCCCCATGAATATCCTGTATGTGACATGAGAAGGGGTCAATGTCTTAAGAGAAATGCAAATATGACGAGAACAAAGGCACGTGAGATTGAGGGCCCTTTTCATAAGCCGAAGGAAGAGAGGAAAATGGCCGAAGAAGGACAAGTCATTGGGTGCCACACCGTTGAGGCCTGGAAGGAGCAGCTTGAGAAGGGTAACGCATCCAAGAAACTGATTGTGGTGGATTTTACTGCTTCATGGTGCGGTCCATGCCGTTTCATTTCCCCAATTTTGGCAGAGATTGCTAAGAAGATGACGAATGTCATCTTTCTCAAGGTCGATGTTGATGAATTGAGGACTGTTTCGGAGGAATGGGGCATCGAAGCTATGCCAACCTTCTTGTTCCTGAAAGAAGGCAAATTAGTGGATAAGGTTGTGGGTGCTAAGAAGGAGGAGTTGCAATTGACCATAAATAAGCATGCTGCCTGA 1638 0.453 MGVISILLSLVLLFTLFSFSYSANTSELFESWCKRHGKTYSSEAEKQYRFKVFEDNYAFVSNHNQMGNSSYTLSLNAFADLSHHEFKVSRLGLSPALLRFDHRAPQQPDDILLDSLPSEVDWRKKGAVTQVKDQGSCGACWSFSATGAIEGINKIVTGSVVSLSEQELVDCDRTYNTGCEGGLMDYAYQFVIDNHGIDTEADYPYQGRERSCIKDKLNRRVVTIDGYTDVPSNDEKQLQKAVATQPVSVGICGSDRAFQLYTKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGTSWGMDGYIHMRRNTGNSEGLCGINMLASYPTKTHPNPPPPSPPTPVKCNIFTYCKQGETCCCARHFIGICISWKCCGLSSAVCCKDNRHCCPHEYPVCDMRRGQCLKRNANMTRTKAREIEGPFHKPKEERKMAEEGQVIGCHTVEAWKEQLEKGNASKKLIVVDFTASWCGPCRFISPILAEIAKKMTNVIFLKVDVDELRTVSEEWGIEAMPTFLFLKEGKLVDKVVGAKKEELQLTINKHAA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0953 545 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 274 284 IPR025660 -
Lele03g0953 545 Gene3D Glutaredoxin 421 545 - -
Lele03g0953 545 ProSitePatterns Thioredoxin family active site. 463 481 IPR017937 -
Lele03g0953 545 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 325 - -
Lele03g0953 545 FunFam Cysteine protease 1 345 408 - -
Lele03g0953 545 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 134 145 IPR000169 -
Lele03g0953 545 SUPERFAMILY Thioredoxin-like 434 543 IPR036249 -
Lele03g0953 545 Pfam Papain family cysteine protease 116 330 IPR000668 GO:0006508|GO:0008234
Lele03g0953 545 SMART pept_c1 116 331 IPR000668 GO:0006508|GO:0008234
Lele03g0953 545 SUPERFAMILY Cysteine proteinases 22 331 IPR038765 -
Lele03g0953 545 FunFam Thioredoxin 438 545 - -
Lele03g0953 545 Pfam Thioredoxin 442 541 IPR013766 -
Lele03g0953 545 PRINTS Papain cysteine protease (C1) family signature 134 149 IPR000668 GO:0006508|GO:0008234
Lele03g0953 545 PRINTS Papain cysteine protease (C1) family signature 276 286 IPR000668 GO:0006508|GO:0008234
Lele03g0953 545 PRINTS Papain cysteine protease (C1) family signature 291 297 IPR000668 GO:0006508|GO:0008234
Lele03g0953 545 Gene3D Granulin 345 419 IPR037277 -
Lele03g0953 545 CDD Peptidase_C1A 117 330 IPR039417 -
Lele03g0953 545 CDD TRX_family 450 537 - -
Lele03g0953 545 Gene3D Cysteine proteinases 14 333 - -
Lele03g0953 545 SUPERFAMILY Granulin repeat 345 378 - -
Lele03g0953 545 SMART GRAN_2 348 405 IPR000118 -
Lele03g0953 545 Pfam Granulin 359 406 IPR000118 -
Lele03g0953 545 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 291 310 IPR025661 -
Lele03g0953 545 SMART Inhibitor_I29_2 29 86 IPR013201 -
Lele03g0953 545 FunFam cysteine protease XCP2 10 333 - -
Lele03g0953 545 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Lele03g0953 545 ProSiteProfiles Thioredoxin domain profile. 406 545 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0953 Lele-ChrLele03 5535444 5541842 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0953 03 5535444 5541842 Lele03g0953 03 5535444 5541842 ECH
Lele01g0955 01 5515398 5517065 Lele03g0953 03 5535444 5541842 hybridization
Lele02g0957 02 5808112 5809794 Lele03g0953 03 5535444 5541842 hybridization