Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0871 ATGGCTCCACTTTCTCTCTCCCCTTTGTCTTCTGCGTCCGCACCTTCTCGTCTTCTGTCTCACCGGCGAATCTTGGTTTGTCCTCCAAGATTCAGTTATGTTTCTGTTCCTGCAACGGAATCGTTCTCGCCGGCGACTTCGAATTTGACCCCGAAAGTTGTGGTCACCAGAGAGCGTGGCAAGAATGGCAAGCTCATCAGTGCTCTGAATAAACATAAAGTCAATTGTTTGGAGTTTCCACTCATTGAGCACACTTTGGGACCTGACTTGGATAGACTTGCTTCTGTATTAAGTGATAATTCATTTGATTGGATTGTCATAACATCCCCTGAAGCAGGTTCAGTTTTCCTAGAGGCATGGAGAGCTGCTGGGGCCCCCCATGTCAAAATAGGCGTTGTTGGAGCTGGTACTGCAAGTGTTTTCAAGGAAGCCTCACTGTCATCAAAGCAGTCACTTGATTTGGCCTTTTCACCATCAAAAGCAACAGGGAAGGTTTTGATTACAGAGCTTCCAAAGAGTGGAAATAAATGCACTGTGTTGTATCCTGCTTCTGCCAAAGCTAGCAATGAGATTGAGGAAGGACTTTCTAATCGTGGATTTGAGGTTACAAGGTTGAATACATACACAACGGTACCTGTTCAGCACGTTGACCAAGGAATCTTAAAGCAGGCACTTAATATACCTGTTGTTGCAGTAGCTTCACCATCTGCAATCCGTGCCTGGAAGGATCTTATTTCAGAATCAGATTGGACTGGATCTGTTGCATGCATCGGTGAGACTACTGCTGCAATGGCTAAAAGATTAGGGTTTGAACAAGTGTACTACCCATGTCAGCCAGGCGTTGAAGGCTGGGTAGATAGCATTCTCGATGCCTTGGGATCACACGATGATTCATTAAGGTAA 903 0.4551 MAPLSLSPLSSASAPSRLLSHRRILVCPPRFSYVSVPATESFSPATSNLTPKVVVTRERGKNGKLISALNKHKVNCLEFPLIEHTLGPDLDRLASVLSDNSFDWIVITSPEAGSVFLEAWRAAGAPHVKIGVVGAGTASVFKEASLSSKQSLDLAFSPSKATGKVLITELPKSGNKCTVLYPASAKASNEIEEGLSNRGFEVTRLNTYTTVPVQHVDQGILKQALNIPVVAVASPSAIRAWKDLISESDWTGSVACIGETTAAMAKRLGFEQVYYPCQPGVEGWVDSILDALGSHDDSLR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0871 300 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 7 296 IPR039793 GO:0004852|GO:0006780
Lele03g0871 300 CDD HemD 53 288 IPR003754 GO:0004852|GO:0033014
Lele03g0871 300 Gene3D - 203 291 IPR036108 GO:0004852|GO:0033014
Lele03g0871 300 Gene3D - 96 202 IPR036108 GO:0004852|GO:0033014
Lele03g0871 300 FunFam Uroporphyrinogen-III synthase, chloroplastic 96 202 - -
Lele03g0871 300 SUPERFAMILY HemD-like 51 291 IPR036108 GO:0004852|GO:0033014
Lele03g0871 300 Pfam Uroporphyrinogen-III synthase HemD 65 285 IPR003754 GO:0004852|GO:0033014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0871 Lele-ChrLele03 5071814 5076452 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0871 03 5071814 5076452 Lele03g0871 03 5071814 5076452 ECH
Lele01g0874 01 5045064 5064197 Lele03g0871 03 5071814 5076452 hybridization
Lele02g0857 02 5201901 5207080 Lele03g0871 03 5071814 5076452 hybridization