Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0642 ATGTCTTTTTCTCGGGGCTATGTTAATGCCTGCGTTTCAGCGGTGTCCAAGCGCCTGGGGAAGACCCGGGACTGGATTGTGGCGCTCAAAGCACTTATGCTTGTGCACAGGTTGATGAATGAGGGCCCCCCCTTGTTTCAAGAGGAGATCTTATATGCCACGAGGAGGGGAACTAGGCTTCTCAACATGTCCGATTTCAGGGATGAGGCTCACTCTAGCTCCTGGGATAACTCGACTTTCGTCAGGACCTATGCTATTTATCTGGATCAACGGCTCGAGTTGATGCTGTTCGATAGAAAAAGTGGGAGTGTTGGGGGTGGTAGTGGCGGGGGTAGCGTGGACGACAAATTTGGGGGTAGAGATAATTTTAGGTCACCCCCACCGAGACCGTATGAGAATGAATATGGATATGGAGATTTTCCGGGGGAAAGTGGGTATGGAGGTGGGATGCGACGGACAAGATCGTTTGGGGATATGAGCGAAACGGCGGGCCGAGAAGGTAGAGAGGAGAAAAAGGTCAATACTCCGTTGAGGGATATGAAGCCTGAGCGCCTTTTTGGCAAGATGGCTCATCTGCAGAGGTTGTTGGATAGATTCTTGTCTTGTAGGCCTACGGGATTGGCTAAGAATAGTAGGATGATTTTGATTGCATTGTATCCTGTTGTCAGGGAGAGCTTTCAGCTGTATGCGGATATTTGTGAAGTTTTGGCGGTTCTACTTGACAAATTCTTTGATATGGAATACCCGGATTGTGTTAAGGCATTTGATGCCTATGCCAGTGCAGCAAAGCAGATTGATGAGCTTGTTGCCTTCTACAATTGGTGCAAGGATACAGGGGTGGCAAGATCGTCAGAGTATCCTGAAGTTCAGAAGATTACTAGTAAGTTATTGGAGACACTGGAGGAATTTGTGAGGGACAGGGCAAAGAGACCTAAAAGTCCAGAGAGGAAGGAGGAACCTCAGCCTGTTGCTAAAGAAGAGGAGCCAGAACCTGATATGAATGAAATAAAGGCATTACCTCCGCCTGAGAATTACACTCCACCTCCTCCACAAGAGCCAGAGCCAGAGCCGGAGCCACCAAAGCAACAAGTTACAGAGGACTTGGTGAATCTGAGAGATGATGCGGTCACTGCAGATGATCAAGGCAATAGATTGGCTTTAGCACTCTTCAACGGTGCACCGGTTAACAATGCAAATGCATCATGGGAAGCATTCCCATCAAACGGACAGCCAGAAGGGACTTCTGCTTGGCAAACCCCTGCTGCTGAACCTGGCAAGGCTGATTGGGAATTGGCATTGGTTGAGAATGCTAGCAATTTATCTAGGCAGAAACAAGCTTTAGGCGGTGGGCTTGATCCGTTATTATTGAATGGCATGTATGATCAAGGAATGGTGAGACAGCATGTCAGCACGGCCCAACTGAGTGGAGGGAGTGCAAGCAGTGTTGCATTGCCAGGACCAGGGAAGAGCACGACCCCTGTTTTAGCTCTCCCAGCCCCAGATGGATCTGTGCAGGCAGTTAATCAGGATCCATTTGCGGCATCATTAACCATTCCGCCACCATCATATGTGCAAATGGCCGATATGGAGAAGAAGCAGCATTTGCTTGTACATGAGCAGCAGATCTGGCAGCAATATGCGAGGGAAGGGATGCAAGGTCAAACTAGCTTGGCCAAAATCAATGGAAATGGATATTATGCTGGGGCTCCTATGCCGGCGGCGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCTCCCTCTGGGTATTACTATACACCTTACTGA 1794 0.4905 MSFSRGYVNACVSAVSKRLGKTRDWIVALKALMLVHRLMNEGPPLFQEEILYATRRGTRLLNMSDFRDEAHSSSWDNSTFVRTYAIYLDQRLELMLFDRKSGSVGGGSGGGSVDDKFGGRDNFRSPPPRPYENEYGYGDFPGESGYGGGMRRTRSFGDMSETAGREGREEKKVNTPLRDMKPERLFGKMAHLQRLLDRFLSCRPTGLAKNSRMILIALYPVVRESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELVAFYNWCKDTGVARSSEYPEVQKITSKLLETLEEFVRDRAKRPKSPERKEEPQPVAKEEEPEPDMNEIKALPPPENYTPPPPQEPEPEPEPPKQQVTEDLVNLRDDAVTADDQGNRLALALFNGAPVNNANASWEAFPSNGQPEGTSAWQTPAAEPGKADWELALVENASNLSRQKQALGGGLDPLLLNGMYDQGMVRQHVSTAQLSGGSASSVALPGPGKSTTPVLALPAPDGSVQAVNQDPFAASLTIPPPSYVQMADMEKKQHLLVHEQQIWQQYAREGMQGQTSLAKINGNGYYAGAPMPAAMPYGMPPVNGMGPPPSGYYYTPY 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0642 597 FunFam putative clathrin assembly protein At2g25430 171 316 - -
Lele03g0642 597 MobiDBLite consensus disorder prediction 103 138 - -
Lele03g0642 597 SMART enth_2 1 102 IPR013809 -
Lele03g0642 597 SUPERFAMILY GAT-like domain 175 306 - -
Lele03g0642 597 Gene3D - 1 98 IPR008942 -
Lele03g0642 597 CDD ANTH_N_AP180_plant 1 94 - -
Lele03g0642 597 Pfam ANTH domain 152 306 IPR011417 GO:0005543
Lele03g0642 597 Pfam ANTH domain 5 94 IPR011417 GO:0005543
Lele03g0642 597 MobiDBLite consensus disorder prediction 341 358 - -
Lele03g0642 597 MobiDBLite consensus disorder prediction 305 364 - -
Lele03g0642 597 Gene3D ANTH domain 168 317 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lele03g0642 597 PANTHER CLATHRIN ASSEMBLY PROTEIN 2 538 IPR045192 GO:0048268|GO:0072583
Lele03g0642 597 MobiDBLite consensus disorder prediction 305 334 - -
Lele03g0642 597 ProSiteProfiles ENTH domain profile. 1 102 IPR013809 -
Lele03g0642 597 SUPERFAMILY ENTH/VHS domain 4 93 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0642 Lele-ChrLele03 3771886 3773679 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0642 03 3771886 3773679 Lele03g0642 03 3771886 3773679 ECH
Lele01g0642 01 3758699 3760666 Lele03g0642 03 3771886 3773679 hybridization
Lele02g0628 02 3762120 3764084 Lele03g0642 03 3771886 3773679 hybridization