Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0593 ATGCCTCTCGGAGAAAGGGCAGGAGATAACACCGAATCTCGTTATTGCGGTGTAGAGACGGATTTCAATGCTGACATGCCATACGTGCTGTCTCACCATCTCGTTTCTGGGGGATTCGATTTCGTTGTTGCACCTCTGATGGATCCTGCATATCGGCCGAGCTTAGTGCAGAAGGATAGTTTTGGTTCTTCTGTTCTTCCATTTGCTGGATCAGACTTAGTTGTGAGCCCTTCACAGTGGAGTACTCGTGTAGTGGGAAAAATTAGCTCATGGATAGATTTGGATTCAGAGGATGAAACCCTCAGGATGGACTCTGAAACCACTCTCAGACAAGAAGTAGCTTGGGCGTCTCATCTCTCTCTACAGGCTTGCCTTCTACCAGCTCCCAAGAGAACATCTTGTGCTAATTATGCTAGATGTGTGAATCAAATCTTACAGAACCTAAATCATATGCAGTTGTTTCTTAGGATTCCATTGGTCATGTCTGATGATGATTCCATGGGTGCCAATTCTGAAACTTCAATTGATTCTTGGGAAACTTGGAATTCATTTCGTCTTCTCTGTGAGCATCATAGTCAATTGTCCATCGCACTTGATATTGTGAGTACCTTACCATCAGCAAACTCACTTGGACGCTGGTTTGGGGAGCCTGTTAGATCAGCTATAATTAGTACTGATTGCTTTTTGACTAATGCTCGTGGTTATCCATGCCTCTCAAAGCGCCACCAGATGCTAAGTACTCGTTTTCTTAACCATTCTATACAGATAATTATATCCGGAAAATCAGTTCATCCAAGAGCAAGTGTGGATCCAGATGCTACTCATGCTGCTGTGGAAAGACATCCTTTGAGGCCTTATCTGGACTATGTTGCTTATATATACCAAAGAATGGATCCAATTCCTGAGCAAGAACGCTTTGAGCTTGGTTACAGGGACTTTTTACAGGCACCCTTGCAACCTCTCATGGATAATCTAGAGGCTCAAACCTATGAAACATTTGAGAAAGACACAGTGAAATATAGTCAGTATCAAAGAGCAATATGTAAAGCATTGCTGGATAGGGTTCCTGATGAAAAGGTGTCGGAAATTACCACTGTATTGATGGTTGTTGGTGCTGGGCGTGGGCCTCTTGTTCGGGCATCACTAGAGGCAGCTGAAGAGACTGGGAGGAGGCTAAAAGTATATGCAGTGGAAAAGAATCCAAATGCAGTTGTTACACTTAATAGTTTGATTAGGTTAGAGGGCTGGGAAGATACAGTTATCATAGTCTCAAGTGACATGCGCCACTGGAATGCCCCTGAAAAGGCCGACATATTGGTAAGTGAATTGCTAGGTTCTTTTGGTGACAATGAGCTGTCTCCTGAGTGCCTTGATGGAGCCCAGAGGTTTTTGAAGCAAGATGGAATTTCAATACCATCTTCGTACACAAGTTTCCTCCAACCAGTGACAGCTTCAAAGTTATATAATGATGTTAAGGCACATAAAGATATAGCACACTTTGAAACTGCTTATGTTGTGAAATTACACAATGTGGCTAGGCTGGCACCATCTCAACCTGTTTTTACATTTACTCACCCAAAACCCTCAGATATGGAAAGCAACCATCGATATAAGAAGTTACAATTTGTGATACCTAATGACACTGGATCAGCTATGGTTCATGGGTTTGCTGGCTACTTTGATGCTACACTTTACAAAGATGTGCATCTTGGAATTGAACCCTCAACAGCAACGCCAAATATGTTCAGCTGGTTTGCAATATTTTTCCCATTAAGAGTACCCATTTGTGTGGAGCGGGGAGCCACTTTAGAAGTACATTTCTGGCGCTGTTGTGGTTCAACAAAGGTTTGGTATGAGTGGTGCGTTACATCTCCCTCTCCGTCTCCAATTCACAACAGCAATGGACGCTCCTACTGGGTTGGCCTTTAG 1929 0.4323 MPLGERAGDNTESRYCGVETDFNADMPYVLSHHLVSGGFDFVVAPLMDPAYRPSLVQKDSFGSSVLPFAGSDLVVSPSQWSTRVVGKISSWIDLDSEDETLRMDSETTLRQEVAWASHLSLQACLLPAPKRTSCANYARCVNQILQNLNHMQLFLRIPLVMSDDDSMGANSETSIDSWETWNSFRLLCEHHSQLSIALDIVSTLPSANSLGRWFGEPVRSAIISTDCFLTNARGYPCLSKRHQMLSTRFLNHSIQIIISGKSVHPRASVDPDATHAAVERHPLRPYLDYVAYIYQRMDPIPEQERFELGYRDFLQAPLQPLMDNLEAQTYETFEKDTVKYSQYQRAICKALLDRVPDEKVSEITTVLMVVGAGRGPLVRASLEAAEETGRRLKVYAVEKNPNAVVTLNSLIRLEGWEDTVIIVSSDMRHWNAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFLQPVTASKLYNDVKAHKDIAHFETAYVVKLHNVARLAPSQPVFTFTHPKPSDMESNHRYKKLQFVIPNDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRVPICVERGATLEVHFWRCCGSTKVWYEWCVTSPSPSPIHNSNGRSYWVGL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0593 642 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 329 641 IPR029063 -
Lele03g0593 642 PIRSF PRMT5 3 642 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lele03g0593 642 FunFam Protein arginine N-methyltransferase 14 303 - -
Lele03g0593 642 Gene3D - 14 302 - -
Lele03g0593 642 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 314 620 IPR025799 GO:0016274|GO:0018216
Lele03g0593 642 Gene3D - 474 642 - -
Lele03g0593 642 Pfam PRMT5 arginine-N-methyltransferase 302 471 IPR035075 -
Lele03g0593 642 Pfam PRMT5 oligomerisation domain 474 640 IPR035248 -
Lele03g0593 642 FunFam Protein arginine N-methyltransferase 5 474 642 - -
Lele03g0593 642 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 7 642 IPR025799 GO:0016274|GO:0018216
Lele03g0593 642 Pfam PRMT5 TIM barrel domain 38 296 IPR035247 -
Lele03g0593 642 FunFam Protein arginine N-methyltransferase 5 306 473 - -
Lele03g0593 642 Gene3D Vaccinia Virus protein VP39 306 473 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0593 Lele-ChrLele03 3494618 3502274 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0593 03 3494618 3502274 Lele03g0593 03 3494618 3502274 ECH
Lele01g0590 01 3466867 3474474 Lele03g0593 03 3494618 3502274 hybridization
Lele02g0582 02 3479632 3490421 Lele03g0593 03 3494618 3502274 hybridization