Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0557 ATGAATCACGACTCTAATCCAGCTCTCGACCTCTCTCGCGTCCACACCCGCAGATCGACGACACTCCTTCAGTCTTCCCTTTACAGGGTTGCCGGCCGCCGAATCCCCTCTCCGATCTGCTTTAGCCGCTCACTATCGTCGAGACTTTGTGGGCTTGAAGGTAATCAATTTGTAATGTTGCTTCTAACTCGAAAGATGCACCAATTTGGAATAAATCAATTCTCCATTTTCAAGGCAATTGCTTCACCTTATGTTTCTAATTCTCATTGCATTCAGTTTCATAAGATTGTTATAATACTTAAGTTTGTGGAAGCAGTAAAGATGTCTTCCTCACATCTGCCCGCAACAACAGAGACTATTGCACAGGCACTGGAAGCCAAAACCCCACCTGAGGCCATCTCTATTCTTTATCGTGTGCTTGAGAACCCCTCTGCATCTCCTGAAGCTCTGCGCATTAAAGAGCAGGCCATCACAAACCTCTCCGATCTTCTTAGGCAAGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCTTTAATCCCTAAGGCAAAAACTGCAAAAATAGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCTGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCAGTGGACTCGAGCTGAAAAGCGTACTTTTCTGAGGCAGCGGGTTGAGGCAAGGCTTGCAGCTCTTCTTATGGAAAATAAGGATTATGCAGAAGCTTTGACTCTCCTTACTGGCCTGGTCAAAGAGGTTAGAAGATTGGATGACAAACTTCTTCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGGAACCTACCAAAGGCAAAAGCTGCCCTCACAGCAGCAAGAACAGCTGCTAATGCTATTTACGTGCCCCCTGCTCAGCAAGGTGCCATTGATTTGCAAAGCGGGATTCTTCACGCAGAGGAGAAGGATTATAAAACCGCATATAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAATGCACTTGAAGACCCCAAGGCTGTTTTTAGCCTAAAATACATGTTGTTGTGTAAGATTATGGTGAGTCAAGCTGATGATGTGGTGGGCATTATATCTTCTAAAGCAGGCCTCCAATATGTTGGTCCTGACTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCTAAGCGTTCCCTTAAGTTGTTTGAAACTGCTTTACGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCCCTTTATGATACCCTTCTGGAGCAGAACCTTTGCAGATTAATTGAGCCATTCTCAAGGGTTGAGATTGCGCATATTGCTGAGCTAATTGAACTTCCCATTGATAATGTGGAGCGGAAGTTGTCCCAGATGATTTTGGACAAGAAGTTTGCAGGAACATTGGATCAAGGTGCTGGATGCCTCGTCATATTTGATGATCCCAAGAGTGACGCCATTTATCCTGCAACCTTGGAAACTATTTCCAACATAGGGAAGGTTGTGGACAGCCTTTATGTTAGGTCTGCCAAAATCATGGCATGA 1590 0.4478 MNHDSNPALDLSRVHTRRSTTLLQSSLYRVAGRRIPSPICFSRSLSSRLCGLEGNQFVMLLLTRKMHQFGINQFSIFKAIASPYVSNSHCIQFHKIVIILKFVEAVKMSSSHLPATTETIAQALEAKTPPEAISILYRVLENPSASPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKDYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVVGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDNVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKSDAIYPATLETISNIGKVVDSLYVRSAKIMA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0557 529 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 121 235 IPR040773 -
Lele03g0557 529 ProSiteProfiles PCI domain profile. 330 498 IPR000717 -
Lele03g0557 529 Pfam PCI domain 392 493 IPR000717 -
Lele03g0557 529 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 500 525 IPR040780 -
Lele03g0557 529 Coils Coil 153 173 - -
Lele03g0557 529 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 427 510 - -
Lele03g0557 529 SMART PINT_4 427 510 IPR000717 -
Lele03g0557 529 SUPERFAMILY "Winged helix" DNA-binding domain 421 503 IPR036390 -
Lele03g0557 529 Coils Coil 233 253 - -
Lele03g0557 529 FunFam 26S proteasome non-ATPase regulatory subunit 11 153 528 - -
Lele03g0557 529 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 142 525 - -
Lele03g0557 529 Gene3D - 153 528 - -
Lele03g0557 529 SUPERFAMILY TPR-like 236 430 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0557 Lele-ChrLele03 3305255 3307676 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0552 01 3283525 3286019 Lele03g0557 03 3305255 3307676 hybridization
Lele02g0547 02 3295999 3297735 Lele03g0557 03 3305255 3307676 hybridization