Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0537 ATGGTGAATCCTATGGTAGAACGAGCTACGAGCGACATGCTCATTGGTCCTGATTGGGCGATGAATATTGAGATCTGTGACATGCTGAATAGCGACCCCGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAGAATTCAAAAGTTCAACTTCTTGCACTAACTCTAATGGAGACAATCATAAAGAATTGTGGGGACATTGTTCACATGCATGTCGCTGAGAGAGATGTGCTTCATGAGATGGTAAAAATAGCAAAGAAGAAGCCTGATTTTCATGTCAGAGAGAAGATTCTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGACCAAGGGCTAGATACCCGCAGTACTATGCTGCATACCAGGAACTGCTGCGTGCTGGGGCAGTATTCCCTAAGAGATCTGAACAATCTGCACCTGTGTTCACACCTCCACAAATACAACCACTGTCCTCATATCCTCAAAATTTACGCAACTCTGAGGCACGTCAGGATACGGCTGAGTCCTCTGCAGAGCCTGAGTTTCCAACTCTGAGTTTGAGCGAAATTCAGAATGCTCGTGGTATTATGGATGTTCTTGCAGAAATGCTCAGTGCCATAGAACCAAGTAACAAAGAAGGTCTTAGGCAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACCTACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTCGGATGAAGAACTGCTATGCCAAGGTCTATCTCTCAATGACGACCTGCAGCGAGTACTAGCAAAGCATGAAGCCATTGCTTCTGGTGTTCCTGTTGCAAATCCAATAGAGAAAGTGAAGTCTGAGCCTGCTGGAGCACTTGTAGATGTTGGTCCTTTGGTTGATAATGGAGATGCTAGCAAACAAACTGATGCGAGTACTAGTGCTGAAGGTGGGTCCCAAACTTTGAATCAATTATTGCTTCCTGCTCCTCCCACTTCTAATGGCTCAGCTCTTCATGCTAAGGCTGATCCCAAAATGGACTTGCTCAGTGGTGATGATTATACCTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTTCTGTGGGAGAACAGCAACCAGCAAATCCCGTGTCTCCGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCAAATGGAAACAGTGAACTGACTTCCACACATCCAACCCAGCCAACTAATGTTGGTGGACAAACCAGTCCATTAGCCCCCCATGGTCAACAACAGCAGACAGTCATACCTACACAAGGTGCATTTTATGGCAATGGAAGCGTGCCTAATGTGGGGTCACCTCGTTTTGAGCAACCACTTTACTCACAAAGCACAGGTCCTGCCTGGAATGGTCAGGTTGCCCAGCAGCAGCAGCAGTCATCAGCTTTACCAGTTTATGGTGCGCAAAGCAGTGAATCATTGCCACCGCCCCCATGGGAAGCTCAACCAACAGATAACAGTAGTCCAGTAGCAGGCGGCAATTATCCCCCATCACTGCAAGTCACTCAAGTGGTTATGACGCATGTTCAGAGTGGTGCACATACGCAGGGAATTCCGGCATTGGGGAATGACCAAGTTGGCATGTATATGCAGCCGAATGCTGTTCACAGCAATCCAATGGGCTTGCACCCTCAGCATATTCAGGGTGGCGCAGGACCCTATATGGGAATGGTTTCTCCTCAATTGAAAGCTGCTCCTGTGGCTTCTATGTATCCTCAACAGATGTATGGCAACCAATTCACGGGATATGGCTACGGTCAGCAACAAGGGGTCCCATACCTCGAGCAGCAAATGTATGGCCTATCTGTAAGAGATGATAGTGGTTTGAGAAACCCCTACCAGGTTTCTTCCTCATCTTACTTGCCACCTGGCAAACCTTCCAAACCAGAGGACAAGTTATTTGGGGACCTCGTTGACATGGCAAAAGTCAAGTCAAAACCCACTCCAGGTCGAGCTGGTAGCATGTAA 1977 0.4679 MVNPMVERATSDMLIGPDWAMNIEICDMLNSDPGQAKDVVKGIKKRIGSKNSKVQLLALTLMETIIKNCGDIVHMHVAERDVLHEMVKIAKKKPDFHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPKRSEQSAPVFTPPQIQPLSSYPQNLRNSEARQDTAESSAEPEFPTLSLSEIQNARGIMDVLAEMLSAIEPSNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDEELLCQGLSLNDDLQRVLAKHEAIASGVPVANPIEKVKSEPAGALVDVGPLVDNGDASKQTDASTSAEGGSQTLNQLLLPAPPTSNGSALHAKADPKMDLLSGDDYTSPKAETSLALVSVGEQQPANPVSPQNALVLFDMFSNGNSELTSTHPTQPTNVGGQTSPLAPHGQQQQTVIPTQGAFYGNGSVPNVGSPRFEQPLYSQSTGPAWNGQVAQQQQQSSALPVYGAQSSESLPPPPWEAQPTDNSSPVAGGNYPPSLQVTQVVMTHVQSGAHTQGIPALGNDQVGMYMQPNAVHSNPMGLHPQHIQGGAGPYMGMVSPQLKAAPVASMYPQQMYGNQFTGYGYGQQQGVPYLEQQMYGLSVRDDSGLRNPYQVSSSSYLPPGKPSKPEDKLFGDLVDMAKVKSKPTPGRAGSM 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0537 658 FunFam TOM1-like protein 2 1 148 - -
Lele03g0537 658 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Lele03g0537 658 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lele03g0537 658 MobiDBLite consensus disorder prediction 145 181 - -
Lele03g0537 658 MobiDBLite consensus disorder prediction 439 471 - -
Lele03g0537 658 Gene3D - 183 271 IPR038425 -
Lele03g0537 658 MobiDBLite consensus disorder prediction 293 333 - -
Lele03g0537 658 CDD VHS 2 132 - -
Lele03g0537 658 MobiDBLite consensus disorder prediction 613 658 - -
Lele03g0537 658 MobiDBLite consensus disorder prediction 388 496 - -
Lele03g0537 658 CDD GAT_GGA_like_plant 188 266 - -
Lele03g0537 658 Pfam VHS domain 5 129 IPR002014 GO:0035091|GO:0043130
Lele03g0537 658 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lele03g0537 658 PANTHER TOM1-LIKE PROTEIN 1 649 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele03g0537 658 SUPERFAMILY GAT-like domain 139 269 - -
Lele03g0537 658 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Lele03g0537 658 MobiDBLite consensus disorder prediction 299 325 - -
Lele03g0537 658 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Lele03g0537 658 MobiDBLite consensus disorder prediction 388 429 - -
Lele03g0537 658 FunFam TOM1-like protein 2 182 272 - -
Lele03g0537 658 Gene3D - 2 135 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0537 Lele-ChrLele03 3191295 3195879 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0537 03 3191295 3195879 Lele03g0537 03 3191295 3195879 ECH
Lele01g0529 01 3163306 3172824 Lele03g0537 03 3191295 3195879 hybridization
Lele02g0519 02 3141060 3146555 Lele03g0537 03 3191295 3195879 hybridization