Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele03g0522 | ATGGATGTGGGGAAACTGCCCACAGAAAAGCAAAGAAGGAGGGTCTCTCTTGTGAGCAGTTTCATTCCCACACCAGTATGGGATTTCCACGGCCATACTGTTGCCAAGATTGCATGTGGGAATGAGCATGTTGTGGCATTAGTTACCGCAGGAGAGTCATACGTAGGCGAAGACCTCGTGTGCTACTCTTGGGGTAATAACAGCCATGGTCAATTAGGCTTGGGGGACAGGGAGAGCAGGCCACAACCAGAAGTTGTAAAATCATTTGACCAGGAGTCCCCCTGGGCAATTTATGAGGTAGCTTGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAGCCGCGGTGATTCATCAGCAAGCATGTGCTGGACGTTTGGCCTCGGGGATAATGGGCAACTCGGGCATGGAACCACGCGAAGCGAATTGCTTCCTACGCCGGTCAAAGAATTGCCACAGCATGTACATCTAATTTCTGTTGACTGTGGCCTGTTTCATACTAGTGTTGTTTCATCATCTGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCCTGTGCCCTGATGCTACTTTCACTGGAACTGCTTCGGGGGACGCGCTCTCTCCCCTTCTTATCTCATGTACGCCAAATCAACCTAGGTTTCCAGAGCCGATCCAAGTTGCTTGTGGAGCTGCGCATACGGTTATCGTTGCGCGGGAGGGATATAAGATTTGGTCTTGGGGTAGGGGAAGGAGTGGGGTTCTGGGAAATGGCAAGGCAGTGGATTTTTATACTCCCACACTAGTGTTATGGCCTCCACTGATAGAGGATTTCAAGCAAGAGGAGCTGAAGAGTACTGGGGAGAAAGATAAGACGACAGAAAAAGAAACCGAAATGGATGAGAAATTAGCGTCAGCATTGAATGAACTGAAGCAGCTTCAGACAAGGTTTTCGGTGATGGAGAGATATGCCGGGATACTTCATGGTTCAATATTTGGAAAACCTTTTGATGAACGTGACATCCCAGTGTCATTGAGTAACTCAGGGGTATTCGACATTGCAAAGGAATGGGAGAGCATGTTAGAGGAAGCAGATCGTAGTAGGCTAATTAGGTTGGAAATGTTCTACAGAAACATGCTTGCTGGTGTGAAAGATAAGCTAATGAAGAGAAGGATCAAGGAGATTATAAAGGAATGCCTCCAGTCTTCAGAATTTGCAAAATAG | 1212 | 0.4769 | MDVGKLPTEKQRRRVSLVSSFIPTPVWDFHGHTVAKIACGNEHVVALVTAGESYVGEDLVCYSWGNNSHGQLGLGDRESRPQPEVVKSFDQESPWAIYEVACGAFHTALLTHKKSRGDSSASMCWTFGLGDNGQLGHGTTRSELLPTPVKELPQHVHLISVDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDATFTGTASGDALSPLLISCTPNQPRFPEPIQVACGAAHTVIVAREGYKIWSWGRGRSGVLGNGKAVDFYTPTLVLWPPLIEDFKQEELKSTGEKDKTTEKETEMDEKLASALNELKQLQTRFSVMERYAGILHGSIFGKPFDERDIPVSLSNSGVFDIAKEWESMLEEADRSRLIRLEMFYRNMLAGVKDKLMKRRIKEIIKECLQSSEFAK | 403 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele03g0522 | 403 | PRINTS | Chromosome condensation regulator RCC1 signature | 37 | 53 | IPR000408 | - | |
| Lele03g0522 | 403 | PRINTS | Chromosome condensation regulator RCC1 signature | 233 | 254 | IPR000408 | - | |
| Lele03g0522 | 403 | PRINTS | Chromosome condensation regulator RCC1 signature | 164 | 182 | IPR000408 | - | |
| Lele03g0522 | 403 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 174 | 232 | IPR000408 | - | |
| Lele03g0522 | 403 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 125 | 170 | IPR000408 | - | |
| Lele03g0522 | 403 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 62 | 110 | IPR000408 | - | |
| Lele03g0522 | 403 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 100 | 110 | IPR000408 | - | |
| Lele03g0522 | 403 | Gene3D | - | 9 | 300 | IPR009091 | - | |
| Lele03g0522 | 403 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 18 | 290 | - | - | |
| Lele03g0522 | 403 | SUPERFAMILY | RCC1/BLIP-II | 19 | 269 | IPR009091 | - | |
| Lele03g0522 | 403 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 175 | 236 | IPR000408 | - | |
| Lele03g0522 | 403 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 122 | 174 | IPR000408 | - | |
| Lele03g0522 | 403 | Coils | Coil | 292 | 312 | - | - | |
| Lele03g0522 | 403 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 59 | 113 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele03g0522 | Lele-ChrLele03 | 3080128 | 3081339 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele03g0522 | 03 | 3080128 | 3081339 | Lele03g0522 | 03 | 3080128 | 3081339 | ECH | |
| Lele01g0514 | 01 | 3050152 | 3052939 | Lele03g0522 | 03 | 3080128 | 3081339 | hybridization | |
| Lele02g0500 | 02 | 3014081 | 3016853 | Lele03g0522 | 03 | 3080128 | 3081339 | hybridization |