Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0381 ATGGAGCTTTTTAATAACGACGATCTCAACTACGTTGACGACGACTTTTTCGACGTCCCCGATTTTGAGGACGATGACCCTTTCGCCGACAGTCGTTCCCACAGCAACACTGCCTTTCATTCTCCGGACTCCGACTATGAAGAAGATTTTGAAATGAGTCAATCGAAGACTGATACTTCTGCTCTGGAAGCTAGGAATGGGAAAGATATCCAGGGAATTCCTTGGGAGAGGCTTAATTATACCAGGGACAAATACCGTGAGGCTCGACTAAATCAGTACAAGAACTATGAGAATCTCTCTCGCTCTCGGGTGGATCTTGACAAGGAGTGCCTCGAAGTGAGGAAAGGAAATTCCTTTTATGACTTCCAGCTCAATACAAGGATTGTCAAATCAACAATTGTGCATTTTCAGCTGAGGAATTTGTTATGGGCAACGTCGAAGCATGATGTATACCTTATGCAAAACTACTCTGTGATGCATTGGTCGTCTTTACTTCGAAGGAGTAAAGAAGTACTCAATGGGGTGAAACCCATTGTTCCATTTGTTAAGCGCCCTGGATTTTTTGCTCAACCTATCTCCAGAGTACAAATAAGCACCATGGCTGTTAAGGAAAATCTAATGGTAGCGGGTGGTTTCCAGGGAGAGCTTATTTGCAAGAATCTGAATCAATTTGGAGTTGCTTTCTGTGGTAAAATAACTGCCGATGATAATGCTATAACCAATGCTGTGGATGCTTACCGTAATCCCAGCGGGTCTTTGAGGGTCTTGGCAGCAAATAACGACGCCCAAGTTCGGGTTTTCGATGCTGATAATTTTGCTTCTCTCGGTTGCTTCAAATATGAGTGGTCTGTTAACAATATTTCCGTTAGTCCCGATGGAAAGTTGTTAGCTGTTCTTGGGGATAGTACTGAGGGTTTGATAGCTGATGCTAACACTGGAAAGGTTACTGGTAGCCTGACAGGACACTTGGACTATTGTTTTGCTTCTGCGTGGCACCCAGATGGGCGAATATTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACGCTCGATTGCTGTGCTCAAGGGAAGAATGGGAGCAGTAAGAGCCGTGAGGTTCACTTCAGATGGACGGTTTCTGGCTATGGCGGAGCCTGCAGATTTCGTCCATATTTTTGACTCTCACGGTGATTATAACCAAGGACAAGAAATCGATTTATTTGGTGAGATCGCTGGTATTTCCTTTAGCCCTGACACGGAGGCTCTATTTGTCGGTATCGCTGATCGCACATATGGAAGCTTGTTAGAGTTCAACAGGGAACGTTGTAATCAATATCTAGACTCCATGTTTTAG 1356 0.4432 MELFNNDDLNYVDDDFFDVPDFEDDDPFADSRSHSNTAFHSPDSDYEEDFEMSQSKTDTSALEARNGKDIQGIPWERLNYTRDKYREARLNQYKNYENLSRSRVDLDKECLEVRKGNSFYDFQLNTRIVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRSKEVLNGVKPIVPFVKRPGFFAQPISRVQISTMAVKENLMVAGGFQGELICKNLNQFGVAFCGKITADDNAITNAVDAYRNPSGSLRVLAANNDAQVRVFDADNFASLGCFKYEWSVNNISVSPDGKLLAVLGDSTEGLIADANTGKVTGSLTGHLDYCFASAWHPDGRILATGNQDTTCRLWDIRNLSRSIAVLKGRMGAVRAVRFTSDGRFLAMAEPADFVHIFDSHGDYNQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRERCNQYLDSMF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0381 451 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Lele03g0381 451 SUPERFAMILY WD40 repeat-like 190 438 IPR036322 GO:0005515
Lele03g0381 451 Gene3D - 232 446 IPR015943 GO:0005515
Lele03g0381 451 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Lele03g0381 451 FunFam WD-40 repeat family protein 232 448 - -
Lele03g0381 451 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 448 - -
Lele03g0381 451 MobiDBLite consensus disorder prediction 27 62 - -
Lele03g0381 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Lele03g0381 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Lele03g0381 451 SMART WD40_4 355 394 IPR001680 GO:0005515
Lele03g0381 451 SMART WD40_4 271 309 IPR001680 GO:0005515
Lele03g0381 451 SMART WD40_4 312 351 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0381 Lele-ChrLele03 2203850 2208559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0381 297 431 Miscellaneous Gene Families AT5G08390 32.000 1.56e-13 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0381 03 2203850 2208559 Lele03g0381 03 2203850 2208559 ECH
Lele01g0375 01 2182956 2187643 Lele03g0381 03 2203850 2208559 hybridization
Lele02g0371 02 2156869 2159119 Lele03g0381 03 2203850 2208559 hybridization