Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0360 ATGGATTTGTCGGGTTCTCAGTCTGGCCTATCTCTTGGCTTAAACGCTCAGATTTCGTCACCGGGTTTGGCAGGCCATGTTGATGATAATTTAGCTTCCTTTCGACAGAATTCAAGCTTTCGTAGTTCCTCCAATACAACCCCTTTTGTTCCGTTGCATTTGCTTGAGGACAAAGACGACAAGGTTAGGGTCAAATCCAGTGAAGAAAGAGAGGAGGAGGAAGAAGAAGAGGAAGGAGCAGTGGAAGATGAAGCGATCGACTTTATGGGTCGGCCTGTGTGTACCAAGAGGAAATTAGAGGGACAGCCGAATTTCTCTTCGAATCCTCCGAAGCGGCTTGCTGTCGATTCGGGGCTTGACGCGAGGCGAGCTTCAGTGCAGGCTTTGGCGAATCAGCCAATGGAGGTAGCTGACCCCGAGATTCATGAAATAATGGAGAAGGAAAAGCGTAGACAGTTCACAGGAATTGAATTGATTGCTTCTGAGAACTTTGTATGCAGAGCTGTCATGGAGGCTTTGGGAAGTCATTTGACGAACAAGTACTCTGAGGGAATGCCTGGAGCCAAATACTACACAGGGAATCAGTTTATTGATCAGATGGAATTCCTTTGCTGTAAGCGTGCATTGGCTGCCTTTGATCTCCATCCAAGCAAGTGGGGCGTGAACGTTCAGCCTTACTCATGTACTTCTGCCAACTTTGCCGTGTACACTGGTATATTGCATCCAGGGGATCGAATTATGGGTTTGGATCTGCTATCCGGCGGGCATCTGAGTCATGGATATTATACCCACAGTGGAAAGAAGATTTCTGCTGCATCAATATTCTTTGAAACTCTTGCCTACAAAGTCAATCCTCTAACAGGCTTCTTAGACTATGACAAGCTTGAGGAAAAAGCCTGCGATTATCGCCCCAAACTACTTATATGCGGAGGTAGTTCGTATCCTAGGGAATGGGATTATGCAAGGTTTAGGAAGATTGCTGATAAGTGTGGGGCCGTTTTGATGTGTGACATGGCTCATATTAGCGGGCTTGTGGCAGCTAAGGAAGTTGCTAGCCCATTTGATTATTGTGATATTGTTACTTCAACAACCCACAAGAGTCTACGAGGTCCAAGGGGAGGTATTGTCTTTTATAGGAAAGGTCCAAAACCTAGGAAGCAAGGCCAGGCTCTTAATCATGGGGATGATGGTAATTACGACTTGGAGGAAAAGATAAACTTCGCTTTATATCCATCCTTACAAGGAGGCCCGCACAATAATCACATTGCTGCTCTCTCCATAGCATTAAAACAAGTTGCAACTCCAGAGTACAAAGTATATATGCAACAGGTGAGGAAAAATGCACAGGCGTTAGCATCTGCTTTGCTGAAAAGAAAATGCAGATTGGTAACTGATGGCACCGACAATCACTTGTTGCTCTGGGACCTTACTGCACTCGGCTTACTTGATAGAAACTATGAGAAGGTCTGTGAAGCTTGTAATATCACACTCAACAAATGTGCCATTTATGGTTCTATTTCACCTGGAGGAGTGAGAATCGGTACTCCTGCAATGACATCAAGAGGTTGCTTAGAGGATGATTTTGAGATCATAGCTGATTTTCTCCTGAAGGCAGCACAGGTCACAAGCAATATACAGAAGGAATACGGAAAATCTTGTAAAGATTTCCTCAAAGGTCTTCAAAATAATAAAGATATCGTTGAGCTCAGAAATCAGGTCGAGGCATTTGCTTCCGAGCTTCCAATGCCGGCATTTGATATTTGA 1764 0.4461 MDLSGSQSGLSLGLNAQISSPGLAGHVDDNLASFRQNSSFRSSSNTTPFVPLHLLEDKDDKVRVKSSEEREEEEEEEEGAVEDEAIDFMGRPVCTKRKLEGQPNFSSNPPKRLAVDSGLDARRASVQALANQPMEVADPEIHEIMEKEKRRQFTGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQFIDQMEFLCCKRALAAFDLHPSKWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDLLSGGHLSHGYYTHSGKKISAASIFFETLAYKVNPLTGFLDYDKLEEKACDYRPKLLICGGSSYPREWDYARFRKIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIVFYRKGPKPRKQGQALNHGDDGNYDLEEKINFALYPSLQGGPHNNHIAALSIALKQVATPEYKVYMQQVRKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLLDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFEIIADFLLKAAQVTSNIQKEYGKSCKDFLKGLQNNKDIVELRNQVEAFASELPMPAFDI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0360 587 CDD SHMT 138 576 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele03g0360 587 Gene3D Aspartate Aminotransferase, domain 1 138 583 IPR015422 GO:0003824
Lele03g0360 587 Pfam Serine hydroxymethyltransferase 135 534 IPR039429 -
Lele03g0360 587 SUPERFAMILY PLP-dependent transferases 123 585 IPR015424 -
Lele03g0360 587 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 124 586 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele03g0360 587 MobiDBLite consensus disorder prediction 1 18 - -
Lele03g0360 587 MobiDBLite consensus disorder prediction 1 86 - -
Lele03g0360 587 FunFam Serine hydroxymethyltransferase 163 381 - -
Lele03g0360 587 Coils Coil 64 84 - -
Lele03g0360 587 MobiDBLite consensus disorder prediction 53 69 - -
Lele03g0360 587 Hamap Serine hydroxymethyltransferase [glyA]. 133 584 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele03g0360 587 Gene3D - 163 442 IPR015421 GO:0003824
Lele03g0360 587 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 358 374 IPR019798 GO:0030170
Lele03g0360 587 MobiDBLite consensus disorder prediction 31 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0360 Lele-ChrLele03 2066740 2070346 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0360 03 2066740 2070346 Lele03g0360 03 2066740 2070346 ECH
Lele01g0352 01 2055752 2060533 Lele03g0360 03 2066740 2070346 hybridization
Lele02g0349 02 2004821 2008793 Lele03g0360 03 2066740 2070346 hybridization