Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0259 ATGATTGGCAAGGAGAACTTGAGGACGGATGACTTGAACTTATGCTTTGAGCAAAACGGTGGAAACACTACTAGAGGAGTGAAAATGGAAGCTGGGGTGATCACCGAATGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGTCCCTCACTGATAATCAGACGGTGATCGCAGCTTCTGGAGTCTGCCGTGGATGGAGAGATGCCGTTTGCTTCGCCCTTTCCCGTTTGTCACTCTCATGGTGTAGCAAGAACATGAATTACTTGGTCCTGTCGCTTATGCCTAAATTCACAAAACTACAAGTTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGATAATGCAGTTGAGAGTATTTCAAATTTCTGTCACGACCTGCAGATGTTGGACCTCAGCAAAAGTTTCAGGCTTACTGATCGGTCTCTGTATGCCTTAGCCCATGGATGTCCTAATCTTACAAATCTGAACATCAGTGGGTGCTCGGCATTTAGCGATGTTGCTTTGGCATACCTAGCGAGTTTCTGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGCATCAGACACTGCATTACAGGCTATAGGACATTATTGCAACCAATTACAATCTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAACACTTGACTTGTGTGGCTGTGTCCAAATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGGTGTCCCCATCTGAGGTCCCTTGGGCTGTACTACTGTCAAAACATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATAACAGGATGTGGAGATCTGTGAAAGGAATTAATGAAGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGTACGGCACTCACACCCTCTGCTGTTCAAGCCGTGTGCGATTCGTTCCCGGCGCTTCACACCTGCTCCGGCAGGCATTCACTCATCACGAGTGGCTGTTTGAACCTGACCTCTGTGCATTGTGCTTGTGCTGTGCATTCACATCGAGCACCCGCCTCTCTTCCATATCAAGCTCATTGA 1101 0.4578 MIGKENLRTDDLNLCFEQNGGNTTRGVKMEAGVITEWKDIPVELLMQILSLTDNQTVIAASGVCRGWRDAVCFALSRLSLSWCSKNMNYLVLSLMPKFTKLQVLILRQDKPQLEDNAVESISNFCHDLQMLDLSKSFRLTDRSLYALAHGCPNLTNLNISGCSAFSDVALAYLASFCRKLKCLNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCENVGDDGVTSLAAGCPDLRTLDLCGCVQITDESVIALANGCPHLRSLGLYYCQNITDRAMYSLAHSKVNNRMWRSVKGINEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLITSGCLNLTSVHCACAVHSHRAPASLPYQAH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0259 366 PANTHER UNCHARACTERIZED 50 278 - -
Lele03g0259 366 Pfam F-box-like 38 71 IPR001810 GO:0005515
Lele03g0259 366 Pfam Leucine Rich repeat 230 253 IPR001611 GO:0005515
Lele03g0259 366 Pfam Leucine Rich repeat 256 279 IPR001611 GO:0005515
Lele03g0259 366 Pfam Leucine Rich repeat 204 227 IPR001611 GO:0005515
Lele03g0259 366 Gene3D - 37 68 - -
Lele03g0259 366 SUPERFAMILY F-box domain 29 72 IPR036047 GO:0005515
Lele03g0259 366 Gene3D Ribonuclease Inhibitor 69 330 IPR032675 -
Lele03g0259 366 FunFam F-box protein SKP2B 72 290 - -
Lele03g0259 366 SUPERFAMILY RNI-like 71 326 - -
Lele03g0259 366 SMART LRR_CC_2 125 150 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 151 176 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 297 322 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 72 97 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 256 281 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 204 229 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 230 255 IPR006553 -
Lele03g0259 366 SMART LRR_CC_2 177 203 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0259 Lele-ChrLele03 1421014 1423357 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0259 03 1421014 1423357 Lele03g0259 03 1421014 1423357 ECH
Lele01g0253 01 1436990 1440511 Lele03g0259 03 1421014 1423357 hybridization
Lele02g0244 02 1390020 1393130 Lele03g0259 03 1421014 1423357 hybridization