Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0607 ATGGGTGCCGCATCTGCTAGATACCCATTCGGTTTTGCCGTTCACTCCAACCGGAAAGCGGGCATCTCAAGTTCCGAGTTTCCTCTTAATGTGGACGTTTCGAGAATTAGTTTGTGCCCAAGCTCTGTGTCCTCCACAGCTTCAAAGGGTTTTGTAGACCGTATACATGCACTTCCTAATATTGATGATTTCAGCTGGGAGAAATTGCCAACACCCATGCTTGATGCAATTGATAATCCTCTTTGTTTGAAGAACTTATCTCTTAAGCAACTGGCTAGTGAAATCCGTATGGAATTGTCTTTGATGAAGTCAGATGCACGCATTTCATTTGAAGCAGGTTTGGCAGTGGTAGAACTGACAATTGCAATACACCGTGTTTTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTAGGAGATCAGACATATGCACATAAGATTCTTACAGGAAGGAGACCCCTCATGAAGACAGTGAGACAAAAGAATGGCCTGTCTGGATTTACATCCCGATTTGAGAGTGAATATGATGCATTCGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATCTGAAGGGGAGGCGAGAACATGTAGTTGCAATTATCAGCAATTGGACAACTATGGCTGGTCAGGTTTATGAAGCAATGAGCAATGCAGGATATTTGGACCCAAATATGGTTGTGATTCTGAATGACTGCCGTCACTCTTTACATCCAAAAGACGAGGAGGGCCCAAAGGCATCAATCAATGCATTATCCGGAACCCTAAGCAGGATCCAGTCCAGTAAATCCTTCCGAAGGTTTAGAGAAGTTGCTAAAGGTGTTACAAAGCGAATTGGTGGAGGTATGCATGAACTGGCAGCTAAAGTTGATGAATTTGCACGTGGTATGATGGGTCCTCTAGGGTCCACTCTTTTTGATGAGCTTGGGTTGTACTACATTGGCCCTGTGGATGGACACAACATTGAGGAGCTAATTTGTGTTCTAGAAGAAGTGGCATCTCTTGATTCAATGGGCCCTGTCCTGATTCATGTAATAACTGGTGAAAACCAAGGAATGGAATATCATCCGAGTAATAGAGCAGATGGGCAGCAGGATGGTTCTAGCAACTTCGATTCATTTCAACAAGCTAGTCGACCTCGAACATATAGTGATTGTTTGGCGGAAACTTTGGTAATGGAAGCAGAGAAAGATAAAGATATTGTGGTCGTTCATGCGGGAATGACAATGGAACAATCGCTTCAACTGTTTCGAGAAAAAATGCCAGATAAGTTTTTTGATGTGGGAATGGCTGAGCAGCATGCAGTTACATTTGCATCTGGTTTGGCATGTGGGGGATTGAAGCCGTTTTGCATAATACCTTCTTCCTTCCTTCAGAGGGCTTATGACCAGGTGATCCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTTCAAGTGCAGGATTAGTAGGTTCTGATGGTCCCCTACAATGTGGAGCATTCGATATAACATTCATGTCATGCTTGCCAAATATGATAGTCATGGCACCATCTGATGAGATTGAGCTTGCGCACATGGTGGCTACTGCTAGTCATGTCAATGATCGGCCAATTTGCTTCCGGTATCCAAGAGGTGTTTTAGTTAGGAGCGACTACACTGCATGCAATGGCATACCCATTGAGATTGGAAAAGGGAGAGTTCTTATTGAAGGAAAGGAAGTTGCTCTACTGGGATATGGATCAATGGTTCCAAACTGCCTAAAAGCAAGCTCACTTCTTTCAGAGCTAGGGATCGAGGTCACAGTTGTTGATGCAAGGTTCTGCAAGCCCCTGGACATCAACCTTCTCAGGCAGCTTTGTGAAAATCATTCCTTCCTGATTACTGTTGAGGAGGGATCTATTGGGGGATTTGGTTCTCAAGTTGCTCAGTTTTTTGCTCTTGATGGACAGCTTGATGGAAAAGTTAAGTGGCGACCTATTGTGTTACCGGACAATTACATAGAGCATGCATCACCAAATGAGCAGCTTGATGAGGCAGGACTTACTGGACACCACATTGCTGCCACAGCTTTGAGTTTGCTGGGCCGTACCCGTGAAGCCCTTCATTTCATGTATTCATAG 2133 0.4444 MGAASARYPFGFAVHSNRKAGISSSEFPLNVDVSRISLCPSSVSSTASKGFVDRIHALPNIDDFSWEKLPTPMLDAIDNPLCLKNLSLKQLASEIRMELSLMKSDARISFEAGLAVVELTIAIHRVFHAPVDKILWDVGDQTYAHKILTGRRPLMKTVRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDLKGRREHVVAIISNWTTMAGQVYEAMSNAGYLDPNMVVILNDCRHSLHPKDEEGPKASINALSGTLSRIQSSKSFRRFREVAKGVTKRIGGGMHELAAKVDEFARGMMGPLGSTLFDELGLYYIGPVDGHNIEELICVLEEVASLDSMGPVLIHVITGENQGMEYHPSNRADGQQDGSSNFDSFQQASRPRTYSDCLAETLVMEAEKDKDIVVVHAGMTMEQSLQLFREKMPDKFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQKIPVRFVISSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEIELAHMVATASHVNDRPICFRYPRGVLVRSDYTACNGIPIEIGKGRVLIEGKEVALLGYGSMVPNCLKASSLLSELGIEVTVVDARFCKPLDINLLRQLCENHSFLITVEEGSIGGFGSQVAQFFALDGQLDGKVKWRPIVLPDNYIEHASPNEQLDEAGLTGHHIAATALSLLGRTREALHFMYS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0607 710 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 567 699 - -
Lele02g0607 710 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 355 IPR005477 GO:0008661|GO:0016114
Lele02g0607 710 Gene3D - 567 698 IPR009014 GO:0003824
Lele02g0607 710 Gene3D - 389 560 - -
Lele02g0607 710 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 81 696 IPR005477 GO:0008661|GO:0016114
Lele02g0607 710 Pfam Transketolase, C-terminal domain 567 690 IPR033248 -
Lele02g0607 710 SUPERFAMILY TK C-terminal domain-like 562 698 IPR009014 GO:0003824
Lele02g0607 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 387 576 IPR029061 -
Lele02g0607 710 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 47 705 IPR005477 GO:0008661|GO:0016114
Lele02g0607 710 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 388 556 - -
Lele02g0607 710 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 699 IPR005477 GO:0008661|GO:0016114
Lele02g0607 710 Gene3D - 66 363 - -
Lele02g0607 710 CDD TPP_PYR_DXS_TK_like 396 548 - -
Lele02g0607 710 Pfam Transketolase, pyrimidine binding domain 390 551 IPR005475 -
Lele02g0607 710 MobiDBLite consensus disorder prediction 361 385 - -
Lele02g0607 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 72 451 IPR029061 -
Lele02g0607 710 CDD TPP_DXS 110 360 IPR005477 GO:0008661|GO:0016114
Lele02g0607 710 SMART Transket_pyr_3 389 554 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0607 Lele-ChrLele02 3635532 3640775 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0607 02 3635532 3640775 Lele02g0607 02 3635532 3640775 ECH
Lele02g0607 02 3635532 3640775 Lele03g0618 03 3643332 3648836 hybridization
Lele02g0607 02 3635532 3640775 Lele04g0624 04 3779057 3779935 hybridization