Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0618 ATGGGTGCCGCATCTGCTAGATACTCATTCGGTTTTGCCGTTCACTCCAACCGGAAAGTGGGCAGCTCAAGTTCCGAGTTTCCTCTTAATGTGGAGGTTTCGAGACTTAGTTTGTGCCCAAGCTCTGTGTCCTCCACAGCTTCAAAGGGTTTTGTAGACCGTATATGTGCTCTTCCTAATATTGATGATTTTAGCTGGGAGAAATTGCCAACACCCATCCTTGATGCAATCGATAATCCTCTTTGTTTGAAGAACTTATCTCTTAAGGAACTCAAGCAACTGGCTGGTGAAATCCGTATGGAATTGTCTTTGATGACGTCAGATGCACGCATTTCATTTGAAGCAGGTTTGGCAGTGGTGGAACTGACAATTGCAGTACACCGTGTATTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGAGATCAAACATATGCCCATAAGATTCTTACAGGAAGGAGATCCCTCATGAAGACAGTGAGACAAAAGAATGGTCTTTCTGGATTTACATCCCGATCTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATCTGAAGGGGAGGCGAGAACGTGTAGTTTCAATTATCAGCAATTGGACAACTATGGCTGGTCAAGTTTATGAAGCCATGGGCAATGCAGGATATTTGGACTCAGATATGATTGTGATTCTGAATGACTGCCGTCACTCTTTTCATCCAAAAGGCGAGGAGGGCCCAAAGGCATCAATCAATTCATTATCTGGTACCATAACCAGGATCCAGTCCAGTAAATCCTTCCGAAGGTTTAGAGAAGTTGCTAAAGGTGTTACAAAGCGAATTGGTGGAGGTATGCATGAACTGGCAGCTAAAGTTGATGAATTTGCACGTGGTATGATGGGTCCTCTGGGGTCCACTCTTTTTGAAGAGCTTGGACTGTACTACATTGGCCCTGTGGATGGACACAACATTGAGGAGCTAATTTGTGTTCTAGAAGAGGTGGCTTCTCTTGATACAATGGGCCCTGTCCTGATTCATGTAATAACTGGTGAAAACCAAGGAGTGGAATATAAACCGAGTAATTTAGCAGATAAGCAGCAAGATGGTTCTAGCAACTTCGATTCATTTCATCAAGCTAGTCAACCTCGAACATATAGTGATTGCTTGGCGGAAACTTTGGTCATGGAAGCAGAGAAAGATAAAGATATTGTGGTAGTTCATGCGGGAATGTGGATGGAAACATCACTTAAACTGTTTCGAGAAAAAATGCCAGATAAGTTTTTTGATGTGGGTATGGCTGAGCAACATGCAGTTACATTTGCATCCGGTTTGGCATGTGGGGGATTGAAGCCGTTTTGCATAATATCTTCTTCCTTCCTTCAGAGAGCTTATGACCAGGTGATCCATGATGTTGATCAACAGAAAATTCCAGTGCGCTTTGTCATTTCAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTCGATATAACGTTCATGTCATGCTTGCCAAATATGATGGTCATGGCACCATCTGATGAGGTTGAGCTTGCGCATATGGTGGCTACTGCTAGTCATGTCAATGATCGGCCAATTTGCTTCCGGTATCCGAGAGGTGCTTTAGTTAGGAGCAACTACACTGCATGCAATGGCGTACCCATTGAGATTGGAAAAGGGAGAGTTCTTGTTGAAGGAAAGGAAGTTGCTCTACTGGGATATGGATCAATGGTTCCAAACTGCCTAAAAGCTTACTCACTTCTTTCAGAACTAGGGATCCAGGTCACAGTTGCTGATGCAAGGTTCTGCAAGCCCCTGGACATCAACCTTCTCAGGAAGCTTTGTGAAAATCATTCCTTCCTGATTACTGTCGAGGAGGGATCTATCGGGGGATTTGGTTCTCATGTTGCTCAGTTTTTTGCTCTTGATGGACGGCTTGATGGAAAAGTTAAGTGGCGACCAATTGTGTTACCGGACAATTACATAGAGCATGCATCCCCAAATGAGCAGCTTGATGAGGCAGGACTGACTGGACACCACATTGCTGCCACAGCTTTGAGTTTGCTGGGTCGTACCCGTGAAGCCCTTCATTTCATGTGTTCATAG 2142 0.4472 MGAASARYSFGFAVHSNRKVGSSSSEFPLNVEVSRLSLCPSSVSSTASKGFVDRICALPNIDDFSWEKLPTPILDAIDNPLCLKNLSLKELKQLAGEIRMELSLMTSDARISFEAGLAVVELTIAVHRVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTVRQKNGLSGFTSRSESEYDAFGAGHGCNSISAGLGMAVARDLKGRRERVVSIISNWTTMAGQVYEAMGNAGYLDSDMIVILNDCRHSFHPKGEEGPKASINSLSGTITRIQSSKSFRRFREVAKGVTKRIGGGMHELAAKVDEFARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLEEVASLDTMGPVLIHVITGENQGVEYKPSNLADKQQDGSSNFDSFHQASQPRTYSDCLAETLVMEAEKDKDIVVVHAGMWMETSLKLFREKMPDKFFDVGMAEQHAVTFASGLACGGLKPFCIISSSFLQRAYDQVIHDVDQQKIPVRFVISSAGLVGSDGPLQCGAFDITFMSCLPNMMVMAPSDEVELAHMVATASHVNDRPICFRYPRGALVRSNYTACNGVPIEIGKGRVLVEGKEVALLGYGSMVPNCLKAYSLLSELGIQVTVADARFCKPLDINLLRKLCENHSFLITVEEGSIGGFGSHVAQFFALDGRLDGKVKWRPIVLPDNYIEHASPNEQLDEAGLTGHHIAATALSLLGRTREALHFMCS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0618 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Lele03g0618 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 46 708 IPR005477 GO:0008661|GO:0016114
Lele03g0618 713 CDD TPP_PYR_DXS_TK_like 399 551 - -
Lele03g0618 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Lele03g0618 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 390 579 IPR029061 -
Lele03g0618 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 454 IPR029061 -
Lele03g0618 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Lele03g0618 713 Gene3D - 392 564 - -
Lele03g0618 713 Gene3D - 570 701 IPR009014 GO:0003824
Lele03g0618 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
Lele03g0618 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Lele03g0618 713 Gene3D - 66 366 - -
Lele03g0618 713 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 76 699 IPR005477 GO:0008661|GO:0016114
Lele03g0618 713 CDD TPP_DXS 113 363 IPR005477 GO:0008661|GO:0016114
Lele03g0618 713 SMART Transket_pyr_3 392 557 IPR005475 -
Lele03g0618 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 702 IPR005477 GO:0008661|GO:0016114
Lele03g0618 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0618 Lele-ChrLele03 3643332 3648836 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0618 03 3643332 3648836 Lele03g0618 03 3643332 3648836 ECH
Lele01g0617 01 3628250 3633772 Lele03g0618 03 3643332 3648836 hybridization
Lele02g0607 02 3635532 3640775 Lele03g0618 03 3643332 3648836 hybridization