Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g0968 | ATGTCTCCAGTCGAAGCGGAGAAGAATGTCGAAGAAGAGAAGGAGGTGGTGAGAAGGGGAGAGCTCTTGTTCTGCGGGGGTACGAGTTGGGATATTATTGGTCGTCGTAAAGGTCCAGCTGACGGCAACTTGGTCTCTCCATCTCGGCTTCGCCCTCTCGTTGGTGTCGATATTCGATTCGTTGCATCTGGATGTGCATCTTGTCATTGCGTGGCATTGGATGTTGAGGGGCGCTGCTATACATGGGGACGCAATGAGAAGGGGCAACTTGGTCATGGGGATACCATTCAGCGTGATAGGCCAACCGTGATATCTGAACTTTCAAAACATAAAATTGTCAAAGTTGGAGCAGGGAGGAACCACACGGTGGTTGTTACAGAGGATGGACATTCCCTTGCTTTTGGTTGGAATAAGCATGGACAGCTAGGTTCAGGTTCTGTGAAAAATGAAATTGAATCATCTCCAGTTCGCTGTCTTGTGTCAGAAGTCAATTATGCTACTTGTGGCGGTGACTTCTCTGTGTGGTTATCTTCTGTTGAAGGAGCTTCTATACTTACTGCAGGGCTACCACAGTATGGGCAGCTAGGACATGGAACAGACAATGAGTATAATTCCAAAGACAGTTCTGTGAGGTTGGTTTATGAAGCCCAACCACGTCCGCGGGCAATTGCTAAGCTATCTGGTGAAACAATTGTCAAAGTGGCGTGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTCGTGTACACGTGGGGTTTTGGTGGTTATGGAAGGTTAGGGCATAGGGAGCAGAAGGACGAGTGGTCCCCACGTCGTGTGGATGCTTTTCGGGACAGAAATGTTCTGCCTCCTGATGCTGTGATTTCAGCTGGTTCTGTTAACTCTGCATGCACTGCAGGTGGAGGGCAATTGTATATGTGGGGCAAAATAAAGAATACAGGAGATGATTGGATGTATCCTAAGCCTCTGATGGATTTAAGTGGCTGGAACTTGCGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCTTCGTGTATAAGTTGGGGCCATGCTCAACATGGTGAACTGGGATATGGACCTAATGCACAGAAGTCTTCAGCAGTACCCAAAAAGGTGGATATTCTTGAGGGCATGCATGTTATGGGTGTTGCTTGTGGTATGGGCCATTCCATGGTCATTGTTGATGGAACAAATGTTGGTGAACGTCTTGACCAGCTTGATATATACGATGGGAAAGCTTCTGGTGAAGTAAATGAGGAACCAGTAAATAAAGCTCCAGTGCCCAAGCAGAGTACCAAAAAGGGTGCAAAAGGTGGTGACAACTCCAAGAAGAAGAAAGTGAAAGAACCATCTGAATCGGAGGAGGAAGAGGATGATGGAGCAAGTGACGATGAGGTGCAGGAGAATGGCACGGCCGAGGGGAAAAGGAAACGTGGTGGAAATAATTCTGGTAAAGCGAGAGGTAAAGCTAAAGGTTCTGGCCCCGGGAGAAACCGGCCTCCAGTAAAAACGGGTAAGAGAGGAAGACCCCGTAAGTCTTGA | 1560 | 0.4776 | MSPVEAEKNVEEEKEVVRRGELLFCGGTSWDIIGRRKGPADGNLVSPSRLRPLVGVDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVISELSKHKIVKVGAGRNHTVVVTEDGHSLAFGWNKHGQLGSGSVKNEIESSPVRCLVSEVNYATCGGDFSVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIAKLSGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWSPRRVDAFRDRNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPNAQKSSAVPKKVDILEGMHVMGVACGMGHSMVIVDGTNVGERLDQLDIYDGKASGEVNEEPVNKAPVPKQSTKKGAKGGDNSKKKKVKEPSESEEEEDDGASDDEVQENGTAEGKRKRGGNNSGKARGKAKGSGPGRNRPPVKTGKRGRPRKS | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g0968 | 519 | Gene3D | - | 10 | 204 | IPR009091 | - | |
| Lele01g0968 | 519 | Gene3D | - | 205 | 406 | IPR009091 | - | |
| Lele01g0968 | 519 | PANTHER | PROTEIN RCC2 | 7 | 499 | IPR028641 | - | |
| Lele01g0968 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 389 | 399 | IPR000408 | - | |
| Lele01g0968 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 247 | IPR000408 | - | |
| Lele01g0968 | 519 | MobiDBLite | consensus disorder prediction | 442 | 458 | - | - | |
| Lele01g0968 | 519 | MobiDBLite | consensus disorder prediction | 418 | 519 | - | - | |
| Lele01g0968 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Lele01g0968 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 185 | 244 | IPR000408 | - | |
| Lele01g0968 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 353 | 399 | IPR000408 | - | |
| Lele01g0968 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 76 | 125 | IPR000408 | - | |
| Lele01g0968 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 247 | 285 | IPR000408 | - | |
| Lele01g0968 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 128 | 174 | IPR000408 | - | |
| Lele01g0968 | 519 | SUPERFAMILY | RCC1/BLIP-II | 18 | 402 | IPR009091 | - | |
| Lele01g0968 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 128 | IPR000408 | - | |
| Lele01g0968 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 115 | 125 | IPR000408 | - | |
| Lele01g0968 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 402 | IPR000408 | - | |
| Lele01g0968 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 112 | 125 | IPR000408 | - | |
| Lele01g0968 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 250 | 264 | IPR000408 | - | |
| Lele01g0968 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Lele01g0968 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 78 | 94 | IPR000408 | - | |
| Lele01g0968 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 250 | IPR000408 | - | |
| Lele01g0968 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 179 | IPR000408 | - | |
| Lele01g0968 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 303 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g0968 | Lele-ChrLele01 | 5599739 | 5604401 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g0968 | 01 | 5599739 | 5604401 | Lele01g0968 | 01 | 5599739 | 5604401 | ECH | |
| Lele01g0968 | 01 | 5599739 | 5604401 | Lele03g0965 | 03 | 5617833 | 5622510 | hybridization | |
| Lele01g0968 | 01 | 5599739 | 5604401 | Lele04g0965 | 04 | 5961020 | 5965890 | hybridization |